Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00244 ATGGCttccaacaacaacagcaacattAAAATCCATGAACACTTCAAAGTTGTTCCACCACCATCAACCCAAACATCAACAACACCTCTTACTTTCTTTGACATATTTTGGCTAAGGTTTCATCCGGTAGAAAGAATCTTCTACTACACCCTCCCAAATTCACAATCACACCCTTCTTTTTTCTACCAAAATATTGTTCCAAAACTCAAAACCTCACTTTCTTTAACCCTCCAACACTTTCTCCCATTAGCCGGTAAAATCATTTGGCCTTCTGATTCTCCCAAACCATTCATTCAATTTAATcctaatgatgatgatggtgtttCCTTACTCATTGCAGAGTCTGATTTAGATTTCAACCatgtcattgaaaactcacccCATGAAACTTCTCTGTCTCATTCTTTTGTACCTTACTTAGAATCTACAGATTCGTTTGCTTCTGTTATCTCACTTCAAATAACCCTTTTTCCAAAAAGTGGTTTTTCTATTGGAATAAGCACACATCATGCTGTTATTGATGGAAAATCTTCAACTATGTTCCTCAAAGCTTGGGCTTATCTATGCAACAAAATCATTGAAACGGAAGATTCGCCAATTTTGTTGCCAAAGTTAGAACCTTTATTCGACAGGGAAATCATCAAAGATCAAAAAGGACTTGGTGATACATTCACAAATAACTGGATCGAGATCATGGCCAAAATGTTCCCAAACGAAAAAGGTAACGAACGATGCTTGAAAATTTTACCTATTCAACCAAAACTAGATGACCATGTACGTGCTACGTTCGAGCTCACACGTGAAGATTTGAATAAGATAAAACAAATGGTGTTATCCAAATGGGAAACATTTGATACAAATGAATCAAAGCCTCAAACACTCTCATCTTTTGTTCTCACTTGTGCTTATTCGCTCGTTTGTCTGGCAAAAGCGATTCATGGagttgaaaaagagaaagaaaaatttgtttttgggtTCACCGTAGATTGTAGAGCACGACTAGAACCACCAATACCAAATAACTATTTCGGAAATTGTGTATGGGGAAACTTTGTTGATACAAAACCATTTGATTTCATAAAAGAAGATGGAGTATTTTTAGTTGCTAAGGGAATTCATGATAAAATAGTGATGATAAACGAGAAGGGTCCTCTTGAAGGAACTAAGGATGCATTTGATAAATATACTTCTATGACTAGTGAAGGGTTTGAAATTATCGGAGTGGCGGGGTCTAACAGATTTGGTGTTTatgaaattgattttggttgGGGAAGGCCGGAAAAGGTGGAGATAGTATCAGTTGATAGAGGTTTAACCATCGGTTTGGCTGAGAGTAAAAATGGCAAAGGTGGAATTGAAGTTGGGTTGGTTCTTAATAAGCATGCCATGGATATCTTTAGCACTTTGTTTCTTGAAGGTTTGCATTAA 1428 0.341 MASNNNSNIKIHEHFKVVPPPSTQTSTTPLTFFDIFWLRFHPVERIFYYTLPNSQSHPSFFYQNIVPKLKTSLSLTLQHFLPLAGKIIWPSDSPKPFIQFNPNDDDGVSLLIAESDLDFNHVIENSPHETSLSHSFVPYLESTDSFASVISLQITLFPKSGFSIGISTHHAVIDGKSSTMFLKAWAYLCNKIIETEDSPILLPKLEPLFDREIIKDQKGLGDTFTNNWIEIMAKMFPNEKGNERCLKILPIQPKLDDHVRATFELTREDLNKIKQMVLSKWETFDTNESKPQTLSSFVLTCAYSLVCLAKAIHGVEKEKEKFVFGFTVDCRARLEPPIPNNYFGNCVWGNFVDTKPFDFIKEDGVFLVAKGIHDKIVMINEKGPLEGTKDAFDKYTSMTSEGFEIIGVAGSNRFGVYEIDFGWGRPEKVEIVSVDRGLTIGLAESKNGKGGIEVGLVLNKHAMDIFSTLFLEGLH 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00244 475 Pfam Transferase family 10 467 - -
Tsu04g00244 475 Gene3D - 8 239 IPR023213 -
Tsu04g00244 475 PANTHER - 6 475 - -
Tsu04g00244 475 SUPERFAMILY CoA-dependent acyltransferases 290 442 - -
Tsu04g00244 475 Gene3D - 255 475 IPR023213 -
Tsu04g00244 475 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00244 Tsu-Chr4 2188548 2190254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00244 21 472 Monolignol Biosynthesis Gene Families AT5G48930 22.845 2.10e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00244 - - gmx:100815354 612.838