Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00242 ATGGCTTCATCAATCAATGGTCGCAACCCAAGTGAAATTTACAAAGCACAAGCATTATTATACAAACACATATATGCTTTCATAGATTCCATGTCTCTCAAATGGACAGTTGAAATGAACATACCAAACATTATACACAATCATGGCAAACCAATTTCTCTTTCAAACTTAGTTTCAATTCTTCAAGTTCCATCGTCGAAGTGCGGTAACGTGCAACGTATAATGCGTTACCTCGCGCACAACGGATTCTTCGAGATAATAACAAATCGAGAATCGGAAAATGATGAAGAAGCTTATGCTCTAACTGTTGCTTCAGAACTTCTTGTTAAAGGAAGTGAGCTTTGTTTAGCTCCAATGGTTGAATGTGTTCTTGATCCAACTCTTTCGGGTTCATATCATGAGATGAAAAAGTGGATTTATGAGGAAGATCTTACACTCTTTGGTGTTACTTTAGGAGCTGGTTTTTGGGATTTTCTTGAAAAGAATCCTAGTTATAATGAATCATTTAATGAGGCTATGGCTAGTGAttctaaaatgataaatttagcATTGAGAGATTGTGATTTTGTGTTTGAAGGGTTGGAATCAATTGTTGATGTTGGTGGTGGAACTGGAACAACTGCTAAGATTATTTGTGAGAGATTTCCTAAGTTGAAATGTGTTGTGTTTGATAGGCCACAGGTTGTTGAGAATTTAACTGAAAGTGACAATTTGACTTATGTTGGTGGAGACATGTTCAAATCTATTCCTAATGGTGATGCTGTTCTTCTTAAGTGGATTTTACATAATTGGATTGATAGCGATTGCATAAGGATACTGAAAAAAACTAAAGAAGCTGTTACAAGTGAtggaaaaaaaggaaaagtgaTTATCATAGATATGGTGATAAATGAGAAGGAAGATGAGAACCAAATTACTCAAGTAAAGCTTCTTATGGATGTAAACATGGCTTCTCTTAatggaaaagagagaaatgagaATGAATGGAAGAAACTCTTCAAAGAAGCAGGATTCCATGACTATAAGATATCTCCTTTGACTGGATTTTTGTCTCTTATTGAGATCTATCCTTAA 1074 0.3343 MASSINGRNPSEIYKAQALLYKHIYAFIDSMSLKWTVEMNIPNIIHNHGKPISLSNLVSILQVPSSKCGNVQRIMRYLAHNGFFEIITNRESENDEEAYALTVASELLVKGSELCLAPMVECVLDPTLSGSYHEMKKWIYEEDLTLFGVTLGAGFWDFLEKNPSYNESFNEAMASDSKMINLALRDCDFVFEGLESIVDVGGGTGTTAKIICERFPKLKCVVFDRPQVVENLTESDNLTYVGGDMFKSIPNGDAVLLKWILHNWIDSDCIRILKKTKEAVTSDGKKGKVIIIDMVINEKEDENQITQVKLLMDVNMASLNGKERNENEWKKLFKEAGFHDYKISPLTGFLSLIEIYP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00242 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Tsu04g00242 357 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tsu04g00242 357 Gene3D - 1 108 IPR036388 -
Tsu04g00242 357 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Tsu04g00242 357 PANTHER O-METHYLTRANSFERASE 2 356 IPR016461 GO:0008168
Tsu04g00242 357 Gene3D Vaccinia Virus protein VP39 109 357 IPR029063 -
Tsu04g00242 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Tsu04g00242 357 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 356 - -
Tsu04g00242 357 Pfam O-methyltransferase domain 132 338 IPR001077 GO:0008171
Tsu04g00242 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 357 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00242 Tsu-Chr4 2172676 2174570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00242 9 355 Monolignol Biosynthesis Gene Families AT5G54160 30.812 3.37e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00242 K22588 K13262 ag:AAC49926 628.632