Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00241 ATGGCATCATCAATCAATAACCGCAAACCAAGTGAAATTTTCAAAGCACAAGCACAATTATACAAACACATGTATGCTCACATAGATTCCATGTCTCTTAAATGGTCAATTGAAATGAACATACCAAACATAATCCACAATCATGGTAAACCAATTTCTCTTTCAAACTTAgtttcaattcttcaaattccATCATCGAAAATCGATAACGTGCAACGTCTCATGCGTTACCTCGCGCACAACGGAATCTTCgagataataaaaaatcaaaaattggaaaatgaagaagaagaagaagcttaTGCTCTCACTGTTGTTTCAGAACTTCTTGTTAAAGGaactgaactttgtttagctccaaTGGTTGAGTGTGCTCTTGATCCAACATTTTCATCTTCATTTCATAAGTTTAAGAAATGGATTTATGAAGAAGATCTTACACTCTTTGGTGTGAATTTAGGATCTGATTTTTGGGAGTTTCTTAATGAAAATCCtaaatataatacaatgttTAATGATGCAATGGCTAGTGATTCCAAAATGATAAATTTGGCATTGAAAGATTGTGATTTTGTGTTTGAAGGGTTGGAATCAATTGTTGATGTTGGTGGTGGAAATGGAACAACAGCTAAGATTATTTGTGACAAATTTCCTAAGTTGAAATGTGTTGTGTTTGATAGGCCAAAGGTTGTTGAGAATTTATCTGAAAATGACAATTTGACTTATGTTGGTGGGGACATGTTCACATCTATTCCTAAAGCTGATGCTGTTCTGCTTAAGTGGATTTTACATGATTGGACTGATAAGGATTGTATAAGGATACTGAAAAAATGTAAAGAAGCTGTTACAAGTGATGGAAAAAGAGGAAAAGTGATTGTGATAGATATGGTGATtaatgaaaagaaagaagataaccAACTTACTGAAATAAAGCTACTTATGAATGTATCAATTTCATGTCTTAATGGAAAAGAGAGAACTGAGAAAGAATGGAAGAAACTCTTCATAGAAGCAGGTTTTCAAGACTACAAAATCTCTCCTTGTACTGAATTACTGTCTCTAATTGAGATCTTTCCTTAA 1080 0.3 MASSINNRKPSEIFKAQAQLYKHMYAHIDSMSLKWSIEMNIPNIIHNHGKPISLSNLVSILQIPSSKIDNVQRLMRYLAHNGIFEIIKNQKLENEEEEEAYALTVVSELLVKGTELCLAPMVECALDPTFSSSFHKFKKWIYEEDLTLFGVNLGSDFWEFLNENPKYNTMFNDAMASDSKMINLALKDCDFVFEGLESIVDVGGGNGTTAKIICDKFPKLKCVVFDRPKVVENLSENDNLTYVGGDMFTSIPKADAVLLKWILHDWTDKDCIRILKKCKEAVTSDGKRGKVIVIDMVINEKKEDNQLTEIKLLMNVSISCLNGKERTEKEWKKLFIEAGFQDYKISPCTELLSLIEIFP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00241 359 SUPERFAMILY "Winged helix" DNA-binding domain 10 113 IPR036390 -
Tsu04g00241 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Tsu04g00241 359 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 358 - -
Tsu04g00241 359 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Tsu04g00241 359 Gene3D Vaccinia Virus protein VP39 111 359 IPR029063 -
Tsu04g00241 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 359 IPR016461 GO:0008168
Tsu04g00241 359 Pfam O-methyltransferase domain 135 341 IPR001077 GO:0008171
Tsu04g00241 359 Gene3D - 1 110 IPR036388 -
Tsu04g00241 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 356 IPR029063 -
Tsu04g00241 359 PANTHER O-METHYLTRANSFERASE 2 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00241 Tsu-Chr4 2170412 2172016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00241 10 358 Monolignol Biosynthesis Gene Families AT5G54160 31.389 5.24e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00241 K22588 K13262 ag:AAC49926 587.8