Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00238 ATGGCTTCTCCAAACAACCACATCAAAATCCATGAACAATGCAAAGTTTCTCCTCATTCTTCAAACCAATTATCTCTACCTCTCACTTTCTTGGACTTGATGTGGCTAAGGTTCCATCCGGTAGAACGCATCTTCTTTTATACCCTCCCAAATTCACAATCACACCCTACTTTCTTCTTCCAAAATCTTGTTCCAAAACTCAAATCTTCACTCTCATTAGCTCTCCAACACTTCCTCCCTTTAGCCGCCGGTAATATCATCTGGCCTTCTAATTCTCCAAAACCATTCATCCAATTCGATCCAAATGATGATGGAGTTTCTTTGCTCTTAGCTCAGTGTGACGATGATATAGACTTCAATAAAATCTTGGAGCACAATTCACCTCACGAAGCTTCTTTGTCTCGTTCTTTTGTACCACACTTAGAATCAACGGATTCTTTTGCTTCTGTTATCTCAATTCAAATAACTCTTTTTCCCGAAAATGGTTTTTCCATTGGAATAAGCACACACCATGCTGTTCTGGATGGAAAATCTTCAACCATGTTCGTCAAAGCTTGGGCTTCTATATGTAAATCTCTTGAAGAAACAAAATCGCCAAATTTGGAACCTATTTTAGAACCCTTTTTGGAAAGGGATGTAATCAAAGATCCAAAGGATCTTGAGAATGTGTTCATAAATAGTTGGAACAGAATCTCATCACATTTTGATAAGAGCAATGTGAAAAGCATAAAGATTATGTCAAACATGTTTCAACCAATCATTAAGGATTCGGTTCGAGCCACATTCGAGCTCACACGCGTAGATTTAGAGAAATTAAACAAAAGCATATTGTCCAAATGGAACAATATTGTAGAAGGAGGAGGACAAGTACAAGAACATCCTAAGAAATTATCAAGTTTTGTTCTTACATGTTCTTATGTGTCTATTTGCATAGCAAAAGCGATACAACAATCCGAAAGCGATAAAAAGCAGAAATTTTCATTTGGCTTTCCCGTAGATTGTAGAGATAGATTAGATCATCCAATTCCCGAAAACTATTTCGGAAATTGTGTAACTAATCATATAGTTGATACTGAGCCAGAAGATTTTACAAAAGAAGATGGTGTGGTGATTGTTGCTAGGAAAATTTAtggtaaaattaaaaatatggacAAGGGTGTTCTTGATGGATTAGATAcattaatgtttaaattaatgGCTATGTTTGGGGAAGGAGTTAAAGGAATGGGAGTTGCTGGATCAACAAGGTTTGGAGTATATGagattgattttggttttggaagGCCTGAAAAAGTGGAGATTACTTCAATTGATAGAGGATTAACAATTGGATTAACAGAAAGTAAGGATTTGAAAGGTGGTGTTGAAGTTGGACTTGTTCTTGATAAGAATGTGATGGATTTGTTTCATACCATTTTTCATGAAGGGTTATGCTTTGATTGA 1443 0.3507 MASPNNHIKIHEQCKVSPHSSNQLSLPLTFLDLMWLRFHPVERIFFYTLPNSQSHPTFFFQNLVPKLKSSLSLALQHFLPLAAGNIIWPSNSPKPFIQFDPNDDGVSLLLAQCDDDIDFNKILEHNSPHEASLSRSFVPHLESTDSFASVISIQITLFPENGFSIGISTHHAVLDGKSSTMFVKAWASICKSLEETKSPNLEPILEPFLERDVIKDPKDLENVFINSWNRISSHFDKSNVKSIKIMSNMFQPIIKDSVRATFELTRVDLEKLNKSILSKWNNIVEGGGQVQEHPKKLSSFVLTCSYVSICIAKAIQQSESDKKQKFSFGFPVDCRDRLDHPIPENYFGNCVTNHIVDTEPEDFTKEDGVVIVARKIYGKIKNMDKGVLDGLDTLMFKLMAMFGEGVKGMGVAGSTRFGVYEIDFGFGRPEKVEITSIDRGLTIGLTESKDLKGGVEVGLVLDKNVMDLFHTIFHEGLCFD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00238 480 Gene3D - 254 480 IPR023213 -
Tsu04g00238 480 PANTHER - 5 478 - -
Tsu04g00238 480 Gene3D - 7 241 IPR023213 -
Tsu04g00238 480 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 478 - -
Tsu04g00238 480 Pfam Transferase family 15 471 - -
Tsu04g00238 480 SUPERFAMILY CoA-dependent acyltransferases 315 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00238 Tsu-Chr4 2152994 2159408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00238 8 475 Monolignol Biosynthesis Gene Families AT5G48930 23.918 8.50e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00238 - - gmx:100813762 572.778