LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g00233	atggaacaaagaaaaaatatctttGTTCATGTAATGGTTTTTTTGGTCATGGTCCTACTTAGAGAAAGTACTAATGTTGTTGAAGCAAAAGGAGGGGGtgcagaagaagaagataggATTTTGGAGCTTCCTGGTCAACCTAAGGTTTTGTTTAAGCAATTTTCTGGCTATGTTACTGTTAATCATGAAGCTGGTAGagctctcttttattggttaactGAAGCTCAACAAAATCCTCTCAACAAACCACTTGTCATTTGGCTTAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGTGCATCTGAAGAGATTGGCCCATTTAGATTAAACAAAACAACTTCTGGGCTTTACATTAACAAGTTTGCATGGAACACAGTGGCCAATCTTTTATTCTTGGAAGCTCCGGCCGGCGTCGGTTTCTCCTACACCAACCGCTCTTCCGATCTCCTTGACACCGGTGACCGCCGCACTGCCCAGGACTCTCTGGAATTTGTAATCCAGTGGCTAGAAAGATTCCCACGTTACAAGAATAGGGAACTATATATAACAGGAGAGAGCTATGCAGGACACTATGTCCCTCAATTAGCTAAGGAAATCATGACATATAACATAAAAGCCAAGCAACCTATCAATCTCAAGGGCATAATGGTTGGAAATGCAGTGACAGACAACTATTATGATAACTTAGGCACAGTGACATACTGGTGGAGCCATGCAATGATATCTGATCAAACATACAAACAACTCATTAGCACTTGTGATTTTCATCACCAGAAGGAATCTGATGAATGTGAATCTCTATATAGCTATGCCATGGATCAAGAATTTGGCAACATTGATCAGTACAATATCTATGCTCCTCCATGTAACCATTCCGATGGTAGCTCGTCCGGTACCCACCACACCATTCGGTTGCCCCACCTTCCTCATTTGGCATTTAGGAAAATGGCTGGTTATGATCCATGTACAGAAAAATATGCAGAGGTTTACTACAATAGGCCTGATGTTCAGAAAGCACTTCATGCTAACACAACTGGCATTCCTTATAAATGGACTGCTTGCAGTGAAATTTTGAATAGAAATTGGAATGATACAGATGTATCTGTTCTTCCACTTTATAGAGAATTGATAGCTCATGGAGTAAGAGTTTGGGTTTTCAGTGGGGATGTAGACTCAGTGGTTCCAGTAACAGCAACAAGATATGCACTTGCACAGCTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTTAAAAATCAGGTTGGAGGTTGGACAGAAGTGTATCAAGGACTAACATTTGCCACAGTGAGAGGGGCAGGTCATGAAGTGCCACTATTCAAGCCAAGAGCAGCCCTTCAATTATTCAAATCATTCCTTGCAGGAAAGCCTCTTCCAAAAGTGCAAAAATAG	1419	0.3975	MEQRKNIFVHVMVFLVMVLLRESTNVVEAKGGGAEEEDRILELPGQPKVLFKQFSGYVTVNHEAGRALFYWLTEAQQNPLNKPLVIWLNGGPGCSSVAYGASEEIGPFRLNKTTSGLYINKFAWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNIKAKQPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYKQLISTCDFHHQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNHSDGSSSGTHHTIRLPHLPHLAFRKMAGYDPCTEKYAEVYYNRPDVQKALHANTTGIPYKWTACSEILNRNWNDTDVSVLPLYRELIAHGVRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVGGWTEVYQGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKVQK	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g00233	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	169	194	IPR001563	GO:0004185\|GO:0006508
	Tsu04g00233	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	133	143	IPR001563	GO:0004185\|GO:0006508
	Tsu04g00233	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	120	132	IPR001563	GO:0004185\|GO:0006508
	Tsu04g00233	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	434	447	IPR001563	GO:0004185\|GO:0006508
	Tsu04g00233	472	Gene3D	alpha/beta hydrolase	34	292	IPR029058	-
	Tsu04g00233	472	Pfam	Serine carboxypeptidase	47	463	IPR001563	GO:0004185\|GO:0006508
	Tsu04g00233	472	Gene3D	-	323	360	-	-
	Tsu04g00233	472	SUPERFAMILY	alpha/beta-Hydrolases	42	468	IPR029058	-
	Tsu04g00233	472	Gene3D	-	370	464	-	-
	Tsu04g00233	472	ProSitePatterns	Serine carboxypeptidases, histidine active site.	434	451	IPR033124	GO:0004185
	Tsu04g00233	472	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	12	469	IPR001563	GO:0004185\|GO:0006508
	Tsu04g00233	472	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 25	12	469	-	-
	Tsu04g00233	472	ProSitePatterns	Serine carboxypeptidases, serine active site.	183	190	IPR018202	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g00233	Tsu-Chr4	2089216	2097577	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g00233	328	467	Calmodulin-binding Proteins	AT2G22960	31.206	1.37e-16	76.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g00233	K16297		-	gmx:100807680	838.18