Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00230 ATGGCGTTCTTTGGTAAAATGGGGAAGTTACTCATGAACTCTGCTGTCAAGCAGATCAATCATGATTTATCGATGTCTACTCCTTCGGTATTTCAAGCAATTAGATCCATGTCGTCTGCAAAGCTTTTTGTTGGAGGTGTTTCGTATAACACCGATGATTTCAGTCTCCGAGAACATTTTGCTCGCTACGGTGAAGTTCTTGAGGCAAAGATTATCATGGATCGTGAAACAGGCAGGTCCCGAGGTTTTGGTTTCATAACTTTTGCAACAGCCGAGGAGGCATCTGCTGCCCTTCAGGCTATGGATAACCAGGATCTTCATGGTCGTACGATACGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGTTTTGGTGGCGGTGGCGGTGGTTATGGTGGTGGAGGCTATGGTGGCGGCGGTGGAGGCTATGGTGGTGGAGGCGGCGGTGGTGGCTATGGCGGTGGAGGCTATGGTGGTGGTGGCTATGGCGGTGGTGGCTATGGTGATAACAATTATGGTCGTAATGATAATAACAGTGGTGGACGCTATGGAGGTGGTGGTGATACTTATGCTGCTGGTGGTGAACAAGGCAATGACTTCATTGAGCCACTTGAAAACAACCATGTGGCAGAGAATAATGATCAACCCGATGACTTTGCTGAGACCCGGAGGTGA 675 0.4889 MAFFGKMGKLLMNSAVKQINHDLSMSTPSVFQAIRSMSSAKLFVGGVSYNTDDFSLREHFARYGEVLEAKIIMDRETGRSRGFGFITFATAEEASAALQAMDNQDLHGRTIRVNYATERSRPGFGGGGGGYGGGGYGGGGGGYGGGGGGGGYGGGGYGGGGYGGGGYGDNNYGRNDNNSGGRYGGGGDTYAAGGEQGNDFIEPLENNHVAENNDQPDDFAETRR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00230 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Tsu04g00230 224 SMART rrm1_1 41 114 IPR000504 GO:0003723
Tsu04g00230 224 Gene3D - 12 137 IPR012677 -
Tsu04g00230 224 SUPERFAMILY RNA-binding domain, RBD 26 150 IPR035979 GO:0003676
Tsu04g00230 224 MobiDBLite consensus disorder prediction 165 224 - -
Tsu04g00230 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Tsu04g00230 224 PRINTS Eggshell protein signature 177 195 - -
Tsu04g00230 224 PRINTS Eggshell protein signature 126 141 - -
Tsu04g00230 224 PRINTS Eggshell protein signature 152 162 - -
Tsu04g00230 224 PRINTS Eggshell protein signature 36 52 - -
Tsu04g00230 224 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 191 - -
Tsu04g00230 224 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00230 Tsu-Chr4 2065522 2068414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00230 33 126 C2H2 Transcription Factor Family AT2G19380 34.043 1.69e-11 61.2