Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00220 ATGGCTATGTTTCACTCTTTGGTTTCTTTGGCCTTTTTTATGTTGCTCCTCATACCAGCCATGGAAGGTGGCATGGACTCAAACTGGTACGATGCTCGTGCAACTTTCTATGGCGATGCCACAGGCGCTGAAACCATGCAGGGAGCTTGTGGTTATGGTGATCTTTTCAAACAAGGATATGGGCTTACAACTACAGCACTAAGCACAGCTCTATTTAATAAAGGATCTACTTGCGGTGCATGTTTTGAGATAACGTGTGTCAATGATCCTCAATGGTGTATAAAGGGTGCAAGGCCAATCATAGTAACTGCAACAAATTTTTGTCCTCCAGATTACTCCAAAACCACAGACATTTGGTGTAATCCACCACAAAAACATTTTGACTTGAGTTATAAAATGTTCACCTCTATTGCTTATTATAAAGCCGGTGTCATCCCTGTTAAATATCGTCGTGTTCCATGCTCCAAAAGTGGGGGTGTTAGGTTTGAACTCAATGGAAACCCTTATTTCTTGCTTGTTTTGGTGTATAATGTTGCCAATGCTGGTGATGTCTCTAGTGTGAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAACGCAATTGGGGACAAAAATGGAATACTGGAACGAATTTGGTAGGACAAACCTTGTCATTTCAAGTTACAACAAGTGATGGAAAAACTATGCAGTTTGATTCGGTTTCTCCTTCCAATTGGCAATTTGGACAGATTTACGAGGGCAAGGGAAATTTTTAG 759 0.4124 MAMFHSLVSLAFFMLLLIPAMEGGMDSNWYDARATFYGDATGAETMQGACGYGDLFKQGYGLTTTALSTALFNKGSTCGACFEITCVNDPQWCIKGARPIIVTATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGVIPVKYRRVPCSKSGGVRFELNGNPYFLLVLVYNVANAGDVSSVSVKGSKTGWIPMKRNWGQKWNTGTNLVGQTLSFQVTTSDGKTMQFDSVSPSNWQFGQIYEGKGNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00220 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Tsu04g00220 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Tsu04g00220 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Tsu04g00220 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Tsu04g00220 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Tsu04g00220 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Tsu04g00220 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Tsu04g00220 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Tsu04g00220 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Tsu04g00220 252 SMART dpbb_1 64 149 IPR007112 -
Tsu04g00220 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Tsu04g00220 252 PANTHER EXPANSIN-A21-RELATED 16 252 - -
Tsu04g00220 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Tsu04g00220 252 Gene3D - 159 252 IPR036749 -
Tsu04g00220 252 Gene3D - 19 155 IPR036908 -
Tsu04g00220 252 PANTHER EXPANSIN-A15 16 252 IPR002963 GO:0009664
Tsu04g00220 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Tsu04g00220 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Tsu04g00220 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00220 Tsu-Chr4 1992206 1999271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00220 2 252 Expansin Gene Family AT5G39280 64.542 3.23e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00220 - - cit:102617104 369.392