Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00205 ATGGGGTTGAACCTTACAAAGGACAGTCCACAACATAAAATTAGTAGTCCAACAAGTTTGGAACTACATCATAAAATGATTCATTACCTTACCAAGAATTTTATCCGTAACTTGGTATCTAAGCAAAGGAGAAGAATGCTTATTGCTGGTTATGATCTTGACATGTCATATATCACAGATAGAGTATTAGCAATGTCATTTCCTGCTGAACGTATGAGAGCAGTGTATAGAAATCCTCTTTGGCAAGTCAAATCTGTGTTGGATATGAGACATAATGAACATTATAAGGTCTATAATTTGTGCATAGAAGAAAATTATGATCCAGAACACTTCTATGGTCGTGTGGAAGCATACCCTTTTGATGACAATCATGTACCATCTCTTGAAATGATTAAAGCTTTCTGTGAAAGTGTGGATGCATGGCTGGCAAAAGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGTAAAGGTAGAACTGGTTTGATGGTGAGTTCATACCTAACATATTGCGGCATGTCAGCAGACGAAGCTCTTCAATTATATGCAGACAGAAGAACAACGAATAATGAAGGAGTATCAATACCAAGCCAACGTCGATATGTAGGGTACTGGGAAAGTCTACTTTCTGTCCCCAGAGGAGCTGGATATGGACCTAGAAATGTGAATTTGCCTCAACCATGTAGCAGAGAATTGCGACGAATCCGACTGTATGATACTGTCAACATTGACACAGTTTTCTTTGTTATATCAGAACTGCAGGAGattccAAATGAGGTCTACCGTCCACCAGTGGAAGTTTATAGGAGCGGCTGCAGAGAGGTTAAGAAAGGTTATCAAAGAACACAGAGTCCTCGCTATTATATTTCCATTCCTGAAGGTGATGAAGATGGAGTAACATCAGAACTAGAAGAACCTCGTGTTGTAGTTCAAATGGATACAGAGAGTCCTGCAATATACCAAAAATCTTGTTTGGACCATTATTTTGATAAACCTATACAAGTAACTGGAGATGTACGTGTGATATTCTACGAGAAAATGATTGGAGGCCGTCTTTTCTACTGCTGCTTTAATACAGCTTTTATTAGGAACAGCTTACTGCAGCTCACAGTAACGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCGACATTTTGCCTAGAATTATTGTTTGGTCCTGCTAATGCAGGATATTCATCATCTAGTCTTCTATCTATTAGTGATCATTCTAGTGATGattcattataa 1263 0.3824 MGLNLTKDSPQHKISSPTSLELHHKMIHYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAERMRAVYRNPLWQVKSVLDMRHNEHYKVYNLCIEENYDPEHFYGRVEAYPFDDNHVPSLEMIKAFCESVDAWLAKDPKNIAVIHCMAGKGRTGLMVSSYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVGYWESLLSVPRGAGYGPRNVNLPQPCSRELRRIRLYDTVNIDTVFFVISELQEIPNEVYRPPVEVYRSGCREVKKGYQRTQSPRYYISIPEGDEDGVTSELEEPRVVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTVTDLDKVGKKGRSICGPTFCLELLFGPANAGYSSSSLLSISDHSSDDSL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00205 420 Gene3D Protein tyrosine phosphatase superfamily 30 212 IPR029021 -
Tsu04g00205 420 CDD PTP_PTEN 54 209 IPR045101 GO:0016791
Tsu04g00205 420 ProSiteProfiles C2 tensin-type domain profile. 244 399 IPR014020 -
Tsu04g00205 420 Pfam C2 domain of PTEN tumour-suppressor protein 321 396 IPR014020 -
Tsu04g00205 420 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 132 187 IPR000387 GO:0016311|GO:0016791
Tsu04g00205 420 Gene3D - 278 401 - -
Tsu04g00205 420 PANTHER BNAC03G16750D PROTEIN 1 413 - -
Tsu04g00205 420 Pfam Tyrosine phosphatase family 132 184 IPR026893 GO:0004721
Tsu04g00205 420 ProSiteProfiles Phosphatase tensin-type domain profile. 44 213 IPR029023 -
Tsu04g00205 420 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 306 398 IPR035892 -
Tsu04g00205 420 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 50 210 IPR029021 -
Tsu04g00205 420 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Tsu04g00205 420 SMART PTEN_C2_2 226 398 IPR014020 -
Tsu04g00205 420 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00205 Tsu-Chr4 1884826 1887160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00205 1 403 Protein tyrosine phosphatase (PTP) family AT5G39400 67.160 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00205 K01110 - gmx:100809938 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00205 04 1884826 1887160 Tsu04g00205 04 1884826 1887160 ECH