Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00202 atgagTTCCTATTCCAATGAAAAAGAGAACAATATTGTGGAATCTCACACTCCACAAATAGATGACAATGATACACTCTCAGCTATGGTACTAGGTGCCAATTTGGTGTTTACTGCTGTTCTTAATGCTGCAATTGAACTCAACTTGTTTGAAATCatagctaaacaaagttcaccAAGTAATGGTGGATTCATTTCAACCTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGACTTGCCTAATCGGCTTGACCGGATGTTGCGCTTACTTGCTAGCCACTCTCTTTTGTCCATTTCCACTCGGACCAATGACGATGATGGTAGCTTGGTGAGAGTTTATGGTCTCACACCATCTGGTAAATACTTTGTTAATGGTGAAAATAATGATTGTGGCTATTTGGGTTCAATGGCATCATATTTGGCTCACCCTGCTACCTTAGGGGTGTGGTTGAATTTCAAGGAAGCAGTCATGAATCCACAAATAGACCTATTCAAGAAAGTTAATGGAATATCTTTCTTTGAGTATTTTAATAAAGATCAACAAATGAATGACATATTTAACAAATCAATGACTGATACATGTGCAATTCATATGAAAAAAATCCTTGAAATATACAGAGGATTTGAGGGAATATCAACACTTGTTGATGTAGGAGGTGGAAATGGACAAAGTCTTAAATCAATTATATCCAAATATCCATCAATAAAGGCAATTAATTTTGACCTCCCACAAGTGATTGAAAATACATCACCCTTTCCGGGAATTGAAAATGTTGGAGGAAGTATGTTTGAAAGTGTTCCACAAGGAGATGCCATAATGCTTAAGTTTGTATGCCATAATTGGTCAGATGAAAAATGCTTAGAAATTTTAAGCAATTGTCACAAAGCTTTGCCTCCAAATGGTAAAATCATTCTTGTGGAGTTTTTATCTCCAGAAGATCTTGGATCAACAAATGCTTCTAAGATGGTTTCAATTGTTGATAATATCATGTTTATTACAGCGGGTGGTAAGGAAAGAACTCCAAAAGAATATGAGAGTTTAGGTAAAAAATGTGGATTTTCTAAACTTGAAGTTATTTGTCGTGCTTTCTCCATCCTTGGAGTGATGGAACTATACAAGTAA 1128 0.3493 MSSYSNEKENNIVESHTPQIDDNDTLSAMVLGANLVFTAVLNAAIELNLFEIIAKQSSPSNGGFISTFEIASKLPTQHSDLPNRLDRMLRLLASHSLLSISTRTNDDDGSLVRVYGLTPSGKYFVNGENNDCGYLGSMASYLAHPATLGVWLNFKEAVMNPQIDLFKKVNGISFFEYFNKDQQMNDIFNKSMTDTCAIHMKKILEIYRGFEGISTLVDVGGGNGQSLKSIISKYPSIKAINFDLPQVIENTSPFPGIENVGGSMFESVPQGDAIMLKFVCHNWSDEKCLEILSNCHKALPPNGKIILVEFLSPEDLGSTNASKMVSIVDNIMFITAGGKERTPKEYESLGKKCGFSKLEVICRAFSILGVMELYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00202 375 CDD AdoMet_MTases 215 308 - -
Tsu04g00202 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 372 IPR029063 -
Tsu04g00202 375 PANTHER O-METHYLTRANSFERASE 1 375 IPR016461 GO:0008168
Tsu04g00202 375 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Tsu04g00202 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 375 IPR016461 GO:0008168
Tsu04g00202 375 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Tsu04g00202 375 Gene3D - 4 124 IPR036388 -
Tsu04g00202 375 PIRSF O-mtase 5 375 IPR016461 GO:0008168
Tsu04g00202 375 SUPERFAMILY "Winged helix" DNA-binding domain 24 128 IPR036390 -
Tsu04g00202 375 Gene3D Vaccinia Virus protein VP39 128 375 IPR029063 -
Tsu04g00202 375 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00202 Tsu-Chr4 1857408 1877594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00202 21 375 Monolignol Biosynthesis Gene Families AT5G54160 46.910 4.14e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00202 - - gmx:100798295 509.99