Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00196 atgtcaACCACCAACCCATCCGACGCCGACACGGCGTCACCACCACCAACACGACCAACAATTACTCTCCCACCACGTCCTTCCGTCGAAGCATTTTTCGCCGGTGCCGCTAGTCCTGGACCCATGACACTAGTTTCAAGCTTCTTCGCCACCGAATCAGCCACTTTCTCTCAACTACTCGCCGGAGCTATGGCTTCTCCTCTtgctttctcttcttcttcctccggTGACTTTTTTTCCGGTAAAGATGATGATGGGTCAAATAGAAACATGGGTTTCAAACAAAGTAGACCTATGAACTTAGTCATTGCTCGTTCACCTGTTTTCACTGTTCCTCCTGGTTTAAGTCCTTCTGGTTTTCTTAATTCTCCTGGGTTTTTTTCTCCTCAGAGTCCCTTTGGAATGTCGCATCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCACAATCTCATAATATGCACATGCAACCTGAATACCAGCAGGTCTCATTAGAACCTCACACCGAACAACACGTAGAGCAGCCATCTTATACTCTAAGTGAAGCTTCAGAGCAGCAAATGGTAGTACATGTATCAGAACCTAGAAATACTCAAATGGAAACGTCGGAGATTTCACATCCTGATAAGAAATATCAACCAGCATCTCTACCTATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGACAGAAGCAGGTTAAGGGGAGTGAGTATCCACGGAGCTACTACAAATGCACACATCTGAATTGTCCTGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATCATCTATAAGGGCCAACATAACCATGATAAGCCTCCGGCGAATAAGCGTGCCAAAGAAAATAGTGATGCGAATGGAAATGCAAATGTTCAACCTAAGTCTGACTCAAACTCACAAGGTTGGTATGGAAATTCGAACAAAATTAGTGAAAGTCTACCTGATTCTTCGGTCCCTGAGCCTGAGAATGATCTGACCTCCACTCAAGGGGCTCTCATACCATGGTCTGGAACGAATGAGAGTGAGGAAGTCGGTGATGCTGGCAATAAGGAAGGTGGAGATGGTGTTGAGCCAAACCCTAAGAGAAGGAGCATTGAGCCTGTGGTTCCTGAAGTACCTCCGTCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGCTATAGGTGGAGAAAGTATGGTCAGAAAGTAGTGAAGGGAAATCCTCATCCAAGGAGCTATTACAAGTGCACTAGTGCAGGATGCAACGTGCGTAAACATGTTGAGAGAGCATCAACAGACCCCAAAGCTGTCATAACTACATATGAGGGAAAACATAATCATGATGTCCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAATAACAATTCAATGCCATCAAAACCACAAGCTGTGGCGCCGGAGAAGCATCCTTTGCTTAAAGATATGGAGTTCGGAAACAATGATCAAAGACCTGTACATTTACGCTTAAAAGAAGAGCAAATCATTGTATAA 1563 0.4402 MSTTNPSDADTASPPPTRPTITLPPRPSVEAFFAGAASPGPMTLVSSFFATESATFSQLLAGAMASPLAFSSSSSGDFFSGKDDDGSNRNMGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQQVSLEPHTEQHVEQPSYTLSEASEQQMVVHVSEPRNTQMETSEISHPDKKYQPASLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHDKPPANKRAKENSDANGNANVQPKSDSNSQGWYGNSNKISESLPDSSVPEPENDLTSTQGALIPWSGTNESEEVGDAGNKEGGDGVEPNPKRRSIEPVVPEVPPSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANNNSMPSKPQAVAPEKHPLLKDMEFGNNDQRPVHLRLKEEQIIV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00196 520 MobiDBLite consensus disorder prediction 274 389 - -
Tsu04g00196 520 SMART WRKY_cls 406 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 MobiDBLite consensus disorder prediction 355 372 - -
Tsu04g00196 520 Gene3D WRKY domain 218 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 Gene3D WRKY domain 391 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 MobiDBLite consensus disorder prediction 468 485 - -
Tsu04g00196 520 ProSiteProfiles WRKY domain profile. 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 MobiDBLite consensus disorder prediction 292 347 - -
Tsu04g00196 520 MobiDBLite consensus disorder prediction 203 230 - -
Tsu04g00196 520 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g00196 520 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 MobiDBLite consensus disorder prediction 274 290 - -
Tsu04g00196 520 Pfam WRKY DNA -binding domain 226 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 MobiDBLite consensus disorder prediction 462 489 - -
Tsu04g00196 520 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 519 IPR044810 GO:0003700
Tsu04g00196 520 SUPERFAMILY WRKY DNA-binding domain 224 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00196 520 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g00196 520 PANTHER WRKY PROTEIN 13 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00196 Tsu-Chr4 1821166 1826502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00196 17 518 WRKY Transcription Factor Family AT2G03340 52.247 1.54e-142 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g00196 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00196 - - gmx:100796679 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00196 04 1821166 1826502 Tsu04g00196 04 1821166 1826502 ECH