Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00195 ATGGGTTGCGTGAACTCCAAGAAAGCTTCAACCGGAGAAGCTCTTACCGTTTCTCCGGTTGGACCTTATGTTTATTCGGGTACTTCTCGAAAAAGGAGCAATGGTTCAGGCAGAAGCATGGTGGTGGAAACTTCTCCATCTTCTAGAGGAAATTctggtgttgttgttgtcaatgtcacacaacaacaacaacaacaacaacatcaggGTGATCTCAAACCCGTTGAGTGGAAAAAGGGAGATTTGAATGTGAAGATTGGTTTTTATCATAGATTTGTTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTTACTTCTGTTGCTGGTGAAGCTATTCATGGTTTGGTTCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAgGTTGGACAAGGTACATATAGCAGTGTTTTCCAAGCACGCCAAGTCGAGACAGGGAGGATGGTTGCCTTAAAGAAGGTGCGGATGGACGCACTTCAACCTGAGAGCATTAGGTTCATGGCGCGGGAGATAATAATCCTCCGTGCACTGGACCACCCTAACATCATGAAGTTAGAGGGTATAATCACTTCACAAGTATCAAATAGTATATACCTTGTATTTGAATACATGGAACATGATCTTGCTGGCCTAGTATCTAACCCCGATATCAAGTTTACAGACGCACAGCTATTGAGTGGAATTGAGCACTGTCACCTACGAGGTATCATGCATCGAGACATTAAAGTATCAAATATATTAGTTAACAATCAAGGTATTCTCAAGATAGGAGACTTTGGACTAGCAAATAATGTCAGCCCGAATAGCAAGCGTCCTCTAACAAGCCGTGTGGTGACTCTATGGTATCGTCCTCCCGAGCTTTTGATGGGATCAACAAACTACGGAGTTACAGTGGATCTGTGGAGTATAGGGTGTGTGTTTGCTGAACTTTTTATAGGGAAACCTATCCTTAAGGGGAGAACTGAGGTAGAACAGTTGCACAAAATTTTTAAGCTTTGTGGATCTCCACCTGAACAATTTTGGAAAAGGAGTAAGCTTCCACTTGCAACAATGTTTAAGCCTCAGGCTAGTTACGAAAGCTCCCTTTCGGAGAGGTGTAAAGGTGTTCTTCCTGCTGCTGCTGTGGACCTACTTGAGACCTTACTCGCTGTTGATCCTTCCAAACGTGGTACTGCCTCCTCTGCACTTATGTCCGAGTATTTCAACACCGCACCATATGCTTGTAGTCCATCGCTCCTTCCAAAGTATATACCAAGTAAAGAATTGGATGCTAAAAATCGGGAAGGCATGAACAGGAAAAAGAATGGCGGTAAAGTGCGTGAGCGCGAGGCTGTAACATCAGCAAGGCCAAGACGGGCACAAAAAGTTATTCAGGATCCTAACAATGTCATCAAACCAGTTATGAAAGAGGAAATGCAGAATATTTCTCAAAACCCTCGTAGAGACGATGATGGTAAAGAACATTATACAAAGGGAAGAGTAGGAGCTGTGCACAGAGAGCAACAAAGACATTTGTATGACGCAAAATCAGATAATGTACAAAGGATGAACGGTTACAACGGCTATAGTGTGTACTCAGGACCAGCACCAGTCTCAGGATCTAGTGGCTTTACATGGGCGAAAAGAAGAAAGCCGGATGCTTCATCAGTATTATCAGATGGCTCAAGAAGCAAAATCAGTGCATTGGATCCAACCTTTGCAAAAGGCACTTATGATTTAACAAAACACGGGATGGAAGTTTCAGAAAGAAAACATCATTACAACACAAGGCATCACGATGAGCCTTCCAAGCATTTAGTACAAAAGCACCTGGGTCATAAAGTAGAATCGTTTGATGCAGCTGATGTATACAATTCCAATTACTTCATGGATCTTGATCTCATAGAAAAATCCGATATTCAAATAAATGAACAGGACGACAACAATTATGGCGAACCTGTGGAACAATATGAAAATGATGAGTTGTCACATTggcatgaaaataaaatgtggCGGCAATCTGTTCGTAAATCAAGATTGGGAAGAGACAGACAAATGATACAAGAAGAAACAGACAAATGA 2067 0.4064 MGCVNSKKASTGEALTVSPVGPYVYSGTSRKRSNGSGRSMVVETSPSSRGNSGVVVVNVTQQQQQQQHQGDLKPVEWKKGDLNVKIGFYHRFVEGEQIAAGWPSWLTSVAGEAIHGLVPLKTDSFEKLDKVGQGTYSSVFQARQVETGRMVALKKVRMDALQPESIRFMAREIIILRALDHPNIMKLEGIITSQVSNSIYLVFEYMEHDLAGLVSNPDIKFTDAQLLSGIEHCHLRGIMHRDIKVSNILVNNQGILKIGDFGLANNVSPNSKRPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSIGCVFAELFIGKPILKGRTEVEQLHKIFKLCGSPPEQFWKRSKLPLATMFKPQASYESSLSERCKGVLPAAAVDLLETLLAVDPSKRGTASSALMSEYFNTAPYACSPSLLPKYIPSKELDAKNREGMNRKKNGGKVREREAVTSARPRRAQKVIQDPNNVIKPVMKEEMQNISQNPRRDDDGKEHYTKGRVGAVHREQQRHLYDAKSDNVQRMNGYNGYSVYSGPAPVSGSSGFTWAKRRKPDASSVLSDGSRSKISALDPTFAKGTYDLTKHGMEVSERKHHYNTRHHDEPSKHLVQKHLGHKVESFDAADVYNSNYFMDLDLIEKSDIQINEQDDNNYGEPVEQYENDELSHWHENKMWRQSVRKSRLGRDRQMIQEETDK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00195 688 Gene3D Transferase(Phosphotransferase) domain 1 208 442 - -
Tsu04g00195 688 PANTHER CYCLIN-DEPENDENT KINASE 85 578 - -
Tsu04g00195 688 MobiDBLite consensus disorder prediction 669 688 - -
Tsu04g00195 688 MobiDBLite consensus disorder prediction 428 451 - -
Tsu04g00195 688 CDD STKc_CDK9_like 125 403 - -
Tsu04g00195 688 SMART serkin_6 125 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00195 688 SUPERFAMILY Protein kinase-like (PK-like) 119 408 IPR011009 -
Tsu04g00195 688 MobiDBLite consensus disorder prediction 428 454 - -
Tsu04g00195 688 PANTHER CELL DIVISION PROTEIN KINASE 85 578 - -
Tsu04g00195 688 Gene3D Phosphorylase Kinase; domain 1 116 207 - -
Tsu04g00195 688 MobiDBLite consensus disorder prediction 27 52 - -
Tsu04g00195 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Tsu04g00195 688 MobiDBLite consensus disorder prediction 26 52 - -
Tsu04g00195 688 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Tsu04g00195 688 ProSiteProfiles Protein kinase domain profile. 125 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00195 688 Pfam Protein kinase domain 125 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00195 Tsu-Chr4 1812038 1816730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00195 122 444 Core Cell Cycle Gene Families AT5G10270 44.220 1.81e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu04g00195 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00195 - - lja:Lj1g3v2982400.1 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00195 04 1812038 1816730 Tsu04g00195 04 1812038 1816730 ECH