Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00193 ATGTCTACTCACTACCATCCTCCTTCTCTCTCCTTTCCATTTTACTCTTCCTCTTCTTCCCACTTCCTTCATCTATTCTCCAAATCATCTCTATaTGCTGTGTCGTTTGTGGCTAAAGACAAACAAGAGAAACGATGCAAAGCTATATCCAAATCACAAAGTCAAGAATATTCAGAAGCATTTCAAACTAATGTAGCAACGTTAAAGTTGAGTGAGATTAATGTGGAGGATGAGGAGCAAGATATTGTGGTTGGATTGGtgaacaaaatcaaatcaatattgAGTTCATTGGACGATGGAGAGATAAATATATCTGCCTATGATACTGCTTGGGTTGCTCTTGTTGAAGATGTTCATGCTAGTGGCACACCTCAATTTCCTTCTAGTCTAGAATGGATTGCAAAAAATCAACTTCAAGATGGTTCATGGGGTGATTGTCAATTATTTTCAGCTCATGATCGAATCATTAACACATTGGCTTGTGTTATTGCGTTAAGATCATGGAATATGCACCCAGAAAAGTGCGACAAAGGAAtgacattttttaaagaaaacctTGGCAAGCTTGAGAATGAGAATGAGGAGCACATGACAATTGGGTTTGAAGTTGCTTTCCCTTCACTTCTTGAACGAGCTAGAGGATTGAACATTGATGTGCCAAATGATTCTCCTATATTGAAAAACATTTTTGCAAAGAGAGATGAAAAACTCACAAGAATACCAAGGGAGATATTGCACAAAGTGCCCACAACTTTGCTCCATAGTTTGGAAGGGATGTCAGAATTGAATTGGACACAACTTCTAAAACTGCAATCTCAAGATGGATCATTCTTGTCTTCTCCATCTTCCACAGCATTTGCACTAATGCAAACTAAAGATGAAAATTGCTTCAAATACTTGAATAGAATTGTCAACAAGTTCAATGGGGGAGTTCCAACTGCGTATCCGGTGGATATGTTTGAACATATTTGGTCGGTTGATCGGCTTCAACGCCTTGGAATATCACAATATTTTCAACAAGAGATCAAAGATTGTATGAGTTATGTTTACAGATATTGGACTGAAAAGGGAATTTGTTGGGCCAGAACTTCAAATGTTCAAGATATTGATGACACAGCCATGGCTTTCAGATTACTAAGATTACATGGCCATCAAGTTTCAGCTGATGTGTTTAAGCACTTTGAGAGAAATGGTGAATTCTTCTGCTTTGCTGGTGAATGTACACAAGCAGTGACAGTAATGTATAATCTATATAGAGCCACTCAAGTTTTGTTTCCAGGAGAAAAAATTCTTGAACATGCCAAACATTTCTCTTCCAAGTTTTTGAAGGAAAAGAGAGAAGCAAATGAACTAATAGATAAATGGATCATAATGAAGAATCTGCCTGAAGAGGTGGGTTATGCATTGGACGTGCCATGGTATGCAAACTTGGGTCGTGTGGAGACAAGATTCTACATTGATCAATATGGTGCTGAAAATGATGTTTGGATTGGCAAAACTCTTTATAGgatGGCATATGTGAACAACAACAATTATCTTGAACTTGCTAAATTAGACTACAACAATTGCCAAGAACAACATCTAACAGAATGGAGCATGATTAAGAAATGGTACTCAAAAGCTAGATTGGGAGAATTTGGATTGAGCAAAAGGAATCtcttattatcttattttttggcAGCAGCAAGCATATTTGAGCCTGAAAGGTCTCATGAGAGACTTGCATGGGCCAAAACCAAAGCATTGCTTGAGGCAATTACATCTTATGCTAGTGATGAAGATTTGAGGAAagattttgtgaaaaaattcaATGACTACATCAACCAGCGAGACCATTCGATTGGCCGGAGGTTGAACAAGTACAAAACAGGACATGGACTTGCTGAGACACTAGTTACAACtatagatcaaatatcatgggATATACTTGTCTCTAATGGTCATGAAATTGGATATGATATTTATCAATGTTGGAAAAAGTGGTTATCAAGTTGGCAAAGTGAAGGAGACAAATGTGAAGGAGAAGCAGAGCTTTTGGTACAAATTATAAACCTAAGTGCTGGCCATTGGATTACTCAGGACCAAATATTCAATCCACAATACAATCATCTTCTTCAACTCACTAACACAATTTGTCATAAGCTTCGTTGCTATCAAAAGGACAAGGCTGAAGGTGGAGCTCAAGGTCGAGTTGAGCTAAGgtttcttcaatttcatcatTCTTCACAATCCATCAACACCATACTTCCTGATATCAAAATGGATGGACCAGCTGGGCATGGTAATGGTTCAAGTATAGACTCATTACTACAACATTATAAATTGGGAAAAACACTTGGTATTGGATCCTTTGGCAAGGTGAAAATTGCTGAACATGTACTGACTCGTCATAAGGTTGCCATCAAGATCCTTAACCGTCGGAAGATAAAGAACATGGAAATGGAAGAAAAAGtcagaagagaaataaaaattttaagaCTGTTCATGCATCCTCACATCATACGGCTGTATGAGGTGATAGAGACTGAAACTGACATATATGTTGTCATGGAGTATGTGAAATCTGGGGAGCTATTTGATTATATTGTAGAAAAGGGCAGGTTACAAGAAGAGGAAGCTCGTAATTTCTTTCAGCAGCAGATAATATCTGGTGTCGAGTACTGTCACAGAAATATGGTTGTTCATAGGGATCTGAAGCCTGAGAATTTGCTCTTGGACTCTAAATGCAATGTCAAGATAGCTGATTTTGGTTTAAGCAACATAATGCGTGACGGACACTTTCTTAAGACAAGTTGTGGCAGCCCCAACTATGCAGCTCCTGAGGTTATCTCTGGGAGATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTTATTTTATATGCTCTTCTTTGTGGAACTCTTCCTTTTGATGATGAAAACATTCCAAACCTCTTCAAGAAAATTAAGgGAGGAATATACACTCTTCCTAGTCATCTGTCACCGGGTGCTAGAGATTTGATACCAAGGCTGCTTGTAGTTGACCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACATCCATGGTTCCAACTCGGACTTCCGCGTTATTTAGCTGTGCCACCGCCCGATACAATGCAACAGGCTAAGAAGATTGATGAGGATATCCTTCTAGAAGTGACAAAAATGGGATTTGACAGGGATCAATTGATTGAATCTCTTCGCAACAGGATACAGAATGAGGGTACCGTGGCATACTATTTAATATTAGACAACCGGTTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTATCAAGAATCCATGGACTCTAGTTTTAGTCAAATGCGTGAAGTTGCTTCTTCAGTTGCTGGGCATCGCATTCCGGGCTATATGGATCCAAGAGCTGGATTGAGACCACAGCTACCTGTTGAAAGAAAATGGGCTCTTGGGCTTCAGTCTCGAGCTCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTCCAAGAATTAAATGTTTGTTGGAAGAAGATTGGGCACTACAACATGAAGTGCAGGTGGGATGCTGGCTTTCCCGGTCATCATGAAGGAACGATAAACAATGCTGCGCATAATAATCATTACTTTAGCGATGATTCCAGCATTATTGAGAATGTGACTGTTTCTAGTTCAAATGTAGTCAAATTTGAACTGCAGCTTTACAAAACTCGGGAAGAGAAGTATCTTCTTGATCTTCAAAGGGTGCATGGTCCAGAGTTTCTTTTCTTGGATCTTTGTGCCGCTTTCCTTTCACAACTTCGTGTTCTCTAG 3801 0.3828 MSTHYHPPSLSFPFYSSSSSHFLHLFSKSSLYAVSFVAKDKQEKRCKAISKSQSQEYSEAFQTNVATLKLSEINVEDEEQDIVVGLVNKIKSILSSLDDGEINISAYDTAWVALVEDVHASGTPQFPSSLEWIAKNQLQDGSWGDCQLFSAHDRIINTLACVIALRSWNMHPEKCDKGMTFFKENLGKLENENEEHMTIGFEVAFPSLLERARGLNIDVPNDSPILKNIFAKRDEKLTRIPREILHKVPTTLLHSLEGMSELNWTQLLKLQSQDGSFLSSPSSTAFALMQTKDENCFKYLNRIVNKFNGGVPTAYPVDMFEHIWSVDRLQRLGISQYFQQEIKDCMSYVYRYWTEKGICWARTSNVQDIDDTAMAFRLLRLHGHQVSADVFKHFERNGEFFCFAGECTQAVTVMYNLYRATQVLFPGEKILEHAKHFSSKFLKEKREANELIDKWIIMKNLPEEVGYALDVPWYANLGRVETRFYIDQYGAENDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQEQHLTEWSMIKKWYSKARLGEFGLSKRNLLLSYFLAAASIFEPERSHERLAWAKTKALLEAITSYASDEDLRKDFVKKFNDYINQRDHSIGRRLNKYKTGHGLAETLVTTIDQISWDILVSNGHEIGYDIYQCWKKWLSSWQSEGDKCEGEAELLVQIINLSAGHWITQDQIFNPQYNHLLQLTNTICHKLRCYQKDKAEGGAQGRVELRFLQFHHSSQSINTILPDIKMDGPAGHGNGSSIDSLLQHYKLGKTLGIGSFGKVKIAEHVLTRHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETETDIYVVMEYVKSGELFDYIVEKGRLQEEEARNFFQQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGRLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMTIPEIRQHPWFQLGLPRYLAVPPPDTMQQAKKIDEDILLEVTKMGFDRDQLIESLRNRIQNEGTVAYYLILDNRFRVSSGYLGAEYQESMDSSFSQMREVASSVAGHRIPGYMDPRAGLRPQLPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWDAGFPGHHEGTINNAAHNNHYFSDDSSIIENVTVSSSNVVKFELQLYKTREEKYLLDLQRVHGPEFLFLDLCAAFLSQLRVL 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00193 1266 SMART serkin_6 773 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00193 1266 Gene3D Kinase associated domain 1, KA1 1147 1264 - -
Tsu04g00193 1266 Pfam Kinase associated domain 1 1223 1265 IPR001772 -
Tsu04g00193 1266 CDD AMPKA_C 1141 1263 - -
Tsu04g00193 1266 SUPERFAMILY KA1-like 1083 1265 IPR028375 -
Tsu04g00193 1266 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 274 494 IPR008930 -
Tsu04g00193 1266 ProSitePatterns Protein kinases ATP-binding region signature. 779 802 IPR017441 GO:0005524
Tsu04g00193 1266 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 77 503 - -
Tsu04g00193 1266 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 80 723 - -
Tsu04g00193 1266 ProSiteProfiles Protein kinase domain profile. 773 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00193 1266 Gene3D Transferase(Phosphotransferase) domain 1 814 1029 - -
Tsu04g00193 1266 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 80 723 - -
Tsu04g00193 1266 SUPERFAMILY Terpenoid synthases 508 738 IPR008949 -
Tsu04g00193 1266 Pfam Terpene synthase family, metal binding domain 513 670 IPR005630 GO:0000287|GO:0010333|GO:0016829
Tsu04g00193 1266 Pfam Protein kinase domain 773 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00193 1266 SUPERFAMILY Protein kinase-like (PK-like) 770 1027 IPR011009 -
Tsu04g00193 1266 Pfam Terpene synthase, N-terminal domain 263 469 IPR001906 GO:0010333|GO:0016829
Tsu04g00193 1266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Tsu04g00193 1266 SFLD Terpene Cyclase Like 1 N-term 77 503 - -
Tsu04g00193 1266 SMART uba_6 1049 1086 IPR015940 -
Tsu04g00193 1266 Gene3D - 106 318 - -
Tsu04g00193 1266 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 1217 1265 IPR001772 -
Tsu04g00193 1266 Gene3D - 89 521 IPR036965 GO:0010333|GO:0016829
Tsu04g00193 1266 Pfam UBA/TS-N domain 1048 1084 IPR015940 -
Tsu04g00193 1266 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 103 185 IPR008930 -
Tsu04g00193 1266 CDD STKc_AMPK_alpha 772 1026 - -
Tsu04g00193 1266 Gene3D - 1038 1089 - -
Tsu04g00193 1266 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1047 1087 IPR015940 -
Tsu04g00193 1266 CDD UBA_SnRK1_plant 1048 1088 - -
Tsu04g00193 1266 Gene3D Farnesyl Diphosphate Synthase 523 812 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00193 Tsu-Chr4 1783685 1799715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00193 773 1026 CBL-interacting serine-threonine protein kinases AT4G24400 51.765 3.23e-85 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Tsu04g00193 Pkinase 9.3e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00193 - - gmx:100784193 1119.76