Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00191 ATGGAAAGGAAGAGAAAGGTTTCTGAAACACTAGTTGAAGACATTAGTCCTTATGAAACAATCAAAGAATGGAATGAAGTAATGAAGGAATCTACTCAATCTAGTTCACAAGGAACTAAAAACAGAAAGAGGTTTGTTGGTGTAAGACAAAGACCATCAGGAAGATGGGTAGCTGAGATAAAAGATACCATTCAAAAGATAAGAGTTTGGTTAGGAACATATGATACAGCCGAAAAAGCTGCAAGAGCCTATGATGAAGCTGCATGTATACTTCGTGGTTCGAATACTAGAACAAATTTCTTACCTTCTTCTAAATCTTCCTCTAGTACTCATGTTCTTCCTTCAAAAATAACCAATCTCCTCCTTCAAAGACTTAAAGCAAGGAGTTATTCTTGCGATTGTGGTCGCAACTGCGAATCGTTATATTGCAGTAAAATGCAGGAAACTGCCGCCGATACAGTTGTGATGCCATTGTTGAGGCCTAAAAATTCTTTATATTGCGGCCGCTATGAACCTTTTATTTGGGATAAAATGTGGGAAAATGAGGCCTATGCTGTCGAAAGTGAAGTTGCAATGTCGTTGCAGAGACCACAAAATCCTTTATATTACGGTAAAATGCAGGAAAATGAGGTCGATGCGGTTGCAATTGCGATGCCGCATAGACCTCAAAATCCTTTATATTATGGCTACAATTGCAGTTTTggaccgcaatttaaaaccatgtcTTCTTCTTCCAACTCTCATTATATGAACAACAAACAAAAGCAACAAGGAGATATATATGGAAATGAATCAACATATATAACAAATGATGAACAATTTATAGATTTCTTTGATGGTCTTGAAGAAGATTATAACACAAGTAACAACATTGAATTTTGTAATAGTAGTAGCAGTGCACAAATTGATGACATTACAAGTGGTTTTGAATCATGTTTAACTGAAAGAGATGAATCTATTTGCAAGGAAAAGGAAATGAACATAGAATGTAATTTCAGCTATATGATGACACAAACTACATCAAGTGCTGAAAAAGAGGAAGACATTGAAGAACACATTGATTTGAGTTTccaacaaaattttcaattcCTTGACAATGTTAATGATGTTGCAATGAACTATTATTCTCCTTTTGATCATGAAGATATTGAGGAGCATGTGGAGTTAGAAatcaatgatgatgatgatgatgagtctTCAATGCTAAGAAATGCTATGAAGAGAATGAAATATGAGAGGAAAATTTCAGCTTCTCTATATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGGATCAGAAAACAAAGCAATAGAGTTTTCTAATGAACTAACCAACCTCAAAAAGGCttgtaacaaaaacaaaattgatgcTTAG 1383 0.3268 MERKRKVSETLVEDISPYETIKEWNEVMKESTQSSSQGTKNRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTYDTAEKAARAYDEAACILRGSNTRTNFLPSSKSSSSTHVLPSKITNLLLQRLKARSYSCDCGRNCESLYCSKMQETAADTVVMPLLRPKNSLYCGRYEPFIWDKMWENEAYAVESEVAMSLQRPQNPLYYGKMQENEVDAVAIAMPHRPQNPLYYGYNCSFGPQFKTMSSSSNSHYMNNKQKQQGDIYGNESTYITNDEQFIDFFDGLEEDYNTSNNIEFCNSSSSAQIDDITSGFESCLTERDESICKEKEMNIECNFSYMMTQTTSSAEKEEDIEEHIDLSFQQNFQFLDNVNDVAMNYYSPFDHEDIEEHVELEINDDDDDESSMLRNAMKRMKYERKISASLYAFNGIPECLKLKLGSENKAIEFSNELTNLKKACNKNKIDA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00191 460 MobiDBLite consensus disorder prediction 28 43 - -
Tsu04g00191 460 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Tsu04g00191 460 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Tsu04g00191 460 CDD AP2 43 100 IPR001471 GO:0003700|GO:0006355
Tsu04g00191 460 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Tsu04g00191 460 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Tsu04g00191 460 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Tsu04g00191 460 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 139 - -
Tsu04g00191 460 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 267 442 - -
Tsu04g00191 460 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Tsu04g00191 460 MobiDBLite consensus disorder prediction 28 47 - -
Tsu04g00191 460 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Tsu04g00191 460 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 4 139 - -
Tsu04g00191 460 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 267 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00191 Tsu-Chr4 1758113 1759495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00191 29 121 AP2-EREBP Transcription Factor Family AT5G19790 65.591 4.72e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g00191 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00191 K09286 - gmx:100796159 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00191 04 1758113 1759495 Tsu04g00191 04 1758113 1759495 ECH