Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00188 ATGGCAGCTTGTGTATTCACCGTTTCACAAGACGGTTCCGGAGATTTTCAAACGGTGCAAGAAGCAATCGACGCCGTGCCTTTTGGCAACACACGACGGACTGTGATCCGGGTGGCTCCGGGAATCTACCGGCAACCTGTGTACGTTGCTAAAACAAAGAATTTCATCACTCTTGCTGGGTTGTGTCCTGAGGATACTGTGCTTACTTGGAATAACACTGCCACCAAAATCGAACACCATCAACCTGCTAGGGTGATTGGGACTGGGACGTTTGGTTGTGGAACTGCCATTGTGGAAGGAGAGGACTTCATTGCAGATAATATTACTTTTGAGAATTCATCCCCCCAGGGTCCAGAACAGGCAGTGGCAATTAGAGTAACAGCAGATCGTTGTGCCTTCTATAATTGCAGGTTCCTTGGATGGAAGGACACACTGTATTTACATTACGGTAAACaatatttgaaagattgttatATCGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACCGCCCTTTTGGAGCACTGTCATATACACTGCAAGGGTGAAGGGTTCATAACCGCACAGGGTAGAAAATCATCGCAGGAATCAACTGGTTATGTATTCTTGAGATGTGTTATCACAGGTAATGGAGGAAATTCATATGCGTATCTTGGACGACCGTGGGGACCTTTTGGAAGGGTGGTTTTTGCATACACTTACATGGATCCATGTATAAGACAAGTTGGTTGGGATAACTGGGGGAAAGTAGAGAATGAGAGGAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCAACCAATCGAGTAACATGGTGTAGAGAATTGATTGATGAAGAAGCCGAGCAATTCATCATGCATCCATTCATTGATCCAGAACCAGATAGATCTTGGCTTGCTCAAAGAATGGGCTTGAGGGAGTGTGCGTACATTGCATCAAAAAGAATTGCTTGCTTCTATTCCTCGAAGCCTCAGCCTCAGCCTCAGCCTCATCAGTTTACTATATTAGTGCGAGGTATTCCTGTTCCACCTGGAGGTACGTGTAATGAGGCTGTTGAGCAATTCTTCATGGAGTATCACCCTTCTGATTATCATTCACATTCAGTTGTCCGTCGAAGCAGCAAACTTCAAATTCTAGTTACTGACGGAGAGAGACTGTACAAAAGGCTTACCcaactaaaaaataaagataactCTCCCCAAAGGCATAGGCGTGATGGATTTTTGGGAATTTTTGGGCATAAAGTTGATATGTTAGATCATTATGAAAAGTCATTGGGAAACATTGCAGATAATGTGAGAATAGAACAGTCTTCAATGGCAGGAAAGGAAGTTCCAGCTGCCTTTGTCTCGTTTAAGTCACGATATGGTGCGGCAATAGCTCTGAACATGCAAGAGGGTATCAATCCTACACACTGGATCACCGAACAAGCTCCAGAGCCTCATGATGTTTATTGGCCTTTCTTTTCTGTGACTTTCATTAGAAGATGGTTCAGCAAACTGGTGGCTTATGTTGCCTGCAACGCTCTTACGATTCTATTTTAA 1560 0.434 MAACVFTVSQDGSGDFQTVQEAIDAVPFGNTRRTVIRVAPGIYRQPVYVAKTKNFITLAGLCPEDTVLTWNNTATKIEHHQPARVIGTGTFGCGTAIVEGEDFIADNITFENSSPQGPEQAVAIRVTADRCAFYNCRFLGWKDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKGEGFITAQGRKSSQESTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDPCIRQVGWDNWGKVENERSACFYEYRCFGPGCCPTNRVTWCRELIDEEAEQFIMHPFIDPEPDRSWLAQRMGLRECAYIASKRIACFYSSKPQPQPQPHQFTILVRGIPVPPGGTCNEAVEQFFMEYHPSDYHSHSVVRRSSKLQILVTDGERLYKRLTQLKNKDNSPQRHRRDGFLGIFGHKVDMLDHYEKSLGNIADNVRIEQSSMAGKEVPAAFVSFKSRYGAAIALNMQEGINPTHWITEQAPEPHDVYWPFFSVTFIRRWFSKLVAYVACNALTILF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00188 519 PANTHER PECTINESTERASE 1 311 - -
Tsu04g00188 519 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 311 - -
Tsu04g00188 519 Pfam Cytosolic domain of 10TM putative phosphate transporter 337 492 IPR027815 -
Tsu04g00188 519 Gene3D - 3 310 IPR012334 -
Tsu04g00188 519 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
Tsu04g00188 519 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Tsu04g00188 519 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00188 Tsu-Chr4 1729299 1735585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00188 5 307 Carbohydrate Esterase AT5G47500 38.658 2.02e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00188 K01051 - gmx:100795636 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00188 04 1729299 1735585 Tsu04g00188 04 1729299 1735585 ECH