Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00179 ATGCAACATTATGGGGAGGGAAAATCAAGTTTGAGAAAAGGGGCATGGAGTAAAATTGAAGATGATCTTCTCAAAGATTGTGTTCAACGTTATGGGGTGGGAAAATGGCACTTAATTCCTCAAAGAGCAGGATTGAAGAGATGTCGCAAGAGTTGTAGATTAAGATGGTTGAACTATCTAAACCCAAATATCAAGAGGGGAGAATTtagtgaagatgaagttgattTGATGATCAAATTGCACAATCTTTTGGGAAACAGATGGACATTAATTGCCGGAAGACTTCCTGGAAGAACTTCAAACGATGTGAAAAACTATTGGAACACCTACATGCGTAACAAAAAGGAGAACAacaaaatgaaggaaaaaatagaaacaataaaACCACATGAAGTGATAAAGCCTCAACCACGAACTTTTTCAAAACCAATGTTGGAAGTGAATAAATTCAATATTGCCTCAAATGATCATAGTTGTTCCAAagttaatatgaatgaagaattaGGTGCAACTTCATCAGGAACATGCAATTGGTGGAAAACTTTGTTATTAGATGACAATGAAGATCATGACAATCACTTATATGGAATGGACTTTTGGGATGATCAAGAGCTTAATTCAAGAACAAATTCTTTTGACTTTCTTACTGAAAGTCAAACTTGGAGTGATTTTCTTGCTCAAATTTGA 687 0.3261 MQHYGEGKSSLRKGAWSKIEDDLLKDCVQRYGVGKWHLIPQRAGLKRCRKSCRLRWLNYLNPNIKRGEFSEDEVDLMIKLHNLLGNRWTLIAGRLPGRTSNDVKNYWNTYMRNKKENNKMKEKIETIKPHEVIKPQPRTFSKPMLEVNKFNIASNDHSCSKVNMNEELGATSSGTCNWWKTLLLDDNEDHDNHLYGMDFWDDQELNSRTNSFDFLTESQTWSDFLAQI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00179 228 SMART sant 65 113 IPR001005 -
Tsu04g00179 228 SMART sant 12 62 IPR001005 -
Tsu04g00179 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 163 - -
Tsu04g00179 228 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Tsu04g00179 228 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Tsu04g00179 228 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Tsu04g00179 228 CDD SANT 68 111 IPR001005 -
Tsu04g00179 228 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Tsu04g00179 228 Gene3D - 13 65 - -
Tsu04g00179 228 CDD SANT 15 60 IPR001005 -
Tsu04g00179 228 Gene3D - 67 136 - -
Tsu04g00179 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Tsu04g00179 228 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 10 163 - -
Tsu04g00179 228 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Tsu04g00179 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00179 Tsu-Chr4 1682207 1683320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00179 5 177 MYB Transcription Factor Family AT1G66370 51.630 5.56e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00179 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00179 - K16166 gmx:100781091 266.159