Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00177 ATGGGAAGATCACCATGTTGTGAAAAAGTTGGTTTGAAAAAAGGACCATGGACACCTGAGGAAGATCAAAAGCTCTTATCTTACATTGATGAACATGGTCATGGAAGTTGGCGTGCTCTTCCTACAAAAGCTGgaCTTGAGAGGTGTGGTAAGAGTTGTAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGAGGAAAGTTTACTTCACAAGAAGAACAAACCATTATTCAACTTCATGCACTATTAGGCAACAGGTGGTCAGCAATAGCCACACATTTACCTAAGAGAACAGATAATGAAATCAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACAAAACAAGGAATTGATCCTATTACACACAAGCCAAAAAATGAAACCCTTTCCTCTGATAATCATTCCAAGAATGTTGCAAATCTTAGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTTAGAGAATCAAAGCTACGTACACAATATTCATTGCAAATTGGAAGTAATAATAATTCTATTTTTCCATCACAATCTTCATCATCtgcatcatcatcttcaaatcAAGTACTTAATATTAAAGAAGAAGGTGAGAAAGAGTGGAAAGGTTATGAAGATTCAACACATTTGTTAGAATTCAAAGAAGTGGTGGAGAATTCATCAATGGCTTTTACTTCTACAATGATTAATGTTGCTGAGGAAGGTTTCACTAATCTCTTGCTCAATAATTCTAACTCCGGTGATCCGAGTTTGTCATCGGAGAGTGGTGGAGAGTGTAATACTTGTGATGGAAGTGGTAGCGGCGGTGGCAGTGGTGGTGGAAGTGATTTCTACGAAGACAACAAGAACTACTGGAACAACATTCTTAATTTAGTTAACTCTTCACCTTCTGATTCACCGATGTTTTAA 936 0.3654 MGRSPCCEKVGLKKGPWTPEEDQKLLSYIDEHGHGSWRALPTKAGLERCGKSCRLRWTNYLRPDIKRGKFTSQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKQGIDPITHKPKNETLSSDNHSKNVANLSHMAQWESARLEAEARLVRESKLRTQYSLQIGSNNNSIFPSQSSSSASSSSNQVLNIKEEGEKEWKGYEDSTHLLEFKEVVENSSMAFTSTMINVAEEGFTNLLLNNSNSGDPSLSSESGGECNTCDGSGSGGGSGGGSDFYEDNKNYWNNILNLVNSSPSDSPMF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00177 311 CDD SANT 69 112 IPR001005 -
Tsu04g00177 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g00177 311 MobiDBLite consensus disorder prediction 255 277 - -
Tsu04g00177 311 CDD SANT 16 61 IPR001005 -
Tsu04g00177 311 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 190 - -
Tsu04g00177 311 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 195 307 - -
Tsu04g00177 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 190 - -
Tsu04g00177 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 195 307 - -
Tsu04g00177 311 Gene3D - 68 143 - -
Tsu04g00177 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu04g00177 311 Gene3D - 13 66 - -
Tsu04g00177 311 SMART sant 66 114 IPR001005 -
Tsu04g00177 311 SMART sant 13 63 IPR001005 -
Tsu04g00177 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g00177 311 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu04g00177 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu04g00177 311 MobiDBLite consensus disorder prediction 255 285 - -
Tsu04g00177 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu04g00177 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00177 Tsu-Chr4 1655068 1657975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00177 1 311 MYB Transcription Factor Family AT3G01140 56.425 1.98e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00177 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00177 K09422 - sspl:121770676 371.318