Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00172 ATGAGATCATATGAAAATGTTTACAAACACAAAATGAATGATGAAAAGTTCAAACTTCCGGTTGGTTTTCGATTCCATCCGACCGATGAAGAGCTCATAAATCAATACCTTGTTAAGAAGGTTAACGACGATAGCTTCAGTGCTATAGCTATCGCGGAGATAGATATGAATAAGTGTGAACCATGGGATTTGGCCGAGTTAGCTAAAATGGGAGAAACAGAATGGTATTTTTTCTGTTTGAGGGACAGAAAATATCCAACTGGTCAAAGGACGAATAGGGCCACTAATGCTGGCTACTGGAAGGCCACTGGCAGAGACAAAGAGATTATCAAAGGAAATCAATTAATTGGGATGAAGAAAACACTAGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAAACCAATTGGGTCATGCATGAATACAGACTTGAGGGAAGTAACACAATTTCTGAGCAGAATCTCTTCAAACAAGTAACGggTGAATGGGTTATATCTAGAGTCTATGACAAGAGCAATTATGGTAAAAAAATGCATGGTAATTCAAAACTTGTAAGGTTTAACTCTCCTATAGAAGGAACATCAAATGCTAATGAATCTCTATTGCCTCAATTGATGGATTATTCTCCATACAATAGTGAGACAAAAACTACTTTTGGTGATTTTTCCCATGTCTTGAATTCGTTTTCCATTCAGAATGAATCTATGAATATTTCATCCTCGTCAAAACAATTTGGTGCTGAAGCAGCACAAAACTGTGTCTTGTCTCAACAAGAATATATGTTGAGGATGCAAATggagaataaaaatattgaaacaaatTCAACGAAAATTGTAAAACAAGACTTTTCTTTTGGGAGAGATCACTTTGATGGTGATATTTCATCTGTGGTGTATGGAAATAATATGTTTCAAAGGTGGTATGGAAATCAGGAATTTGCTTCAACTTCGACCGAGCCGGTGGTCACCGATTGCTTATGGAATTATTga 990 0.3576 MRSYENVYKHKMNDEKFKLPVGFRFHPTDEELINQYLVKKVNDDSFSAIAIAEIDMNKCEPWDLAELAKMGETEWYFFCLRDRKYPTGQRTNRATNAGYWKATGRDKEIIKGNQLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGSNTISEQNLFKQVTGEWVISRVYDKSNYGKKMHGNSKLVRFNSPIEGTSNANESLLPQLMDYSPYNSETKTTFGDFSHVLNSFSIQNESMNISSSSKQFGAEAAQNCVLSQQEYMLRMQMENKNIETNSTKIVKQDFSFGRDHFDGDISSVVYGNNMFQRWYGNQEFASTSTEPVVTDCLWNY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00172 329 Gene3D NAC domain 28 176 IPR036093 GO:0003677|GO:0006355
Tsu04g00172 329 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Tsu04g00172 329 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Tsu04g00172 329 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 7 326 - -
Tsu04g00172 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 326 - -
Tsu04g00172 329 SUPERFAMILY NAC domain 15 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00172 Tsu-Chr4 1627962 1630075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00172 19 329 NAC Transcription Factor Family AT5G07680 47.564 7.45e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g00172 NAM 3.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00172 - - cam:101488836 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00172 04 1627962 1630075 Tsu04g00172 04 1627962 1630075 ECH
Tsu04g00172 04 1627962 1630075 Tsu06g02126 06 26716618 26718495 ECH