Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00166 ATGTCAACATCAACCCAACACCAGTTCCGATACACTCAAACCCCTTCCAAAGTTCTTCACCTTCGCAATCTTCCATGGGAGTGTTCAGAAGAGGAACTCATTGAACTTTGTAATCCCTTCGGTAGAATCATCAACACCAAATGCAATGTTGGCGCTAATCGTAACCAAGCCTTTGTTGAATTCGTGgatcaaaatcaagcaatttCAATGGTTTCATATTATGCTTCATCTTCAGAACCTGCTCAGGTTCGTGGTAAAACTGTTTACATACAGTATTCCAATAGACATGAAATTGTCAACAACAAAAGCCCTGGAGATATTCCTGGAAATGTCTTGCTGGTAACTATTGAAGGCGTGGAAGCCGGGGATGTGAGCATTGATGTTATCCACTTGGTGTTTTCTGCTTTTGGCTTTGTTCATAAAATTGCTACATTTGAAAAGACCGCTGGTTTTCAGGCTCTGATTCAGTTCACTGATGCTGATACTGCTGCTTCAGCTAGGGAAGCACTGGATGGAAGAAGCATACCAAggcaaaattatttttATCATGTTGGTTCTTGTAATTTGCGTATTTCATACTCAGCACATAAAgatctaaatatcaaatttcaatccaatCGTAGCAGGGACTATACAAATCCTATGCTTCCTGTCAATCATAGTGCTATTGAGGGGGCAGCACAGCCCACTATTGGTCCTGATGGCAAGAGGAGAGAACCGGAGAGCAATGTACTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCATCAACACGGTATTCTCTGCATTTGGTACTGTCCAGAAAATCGCCATGTTCGAAAAGAATGGTCAAACTCAGGCACTAATTCAGTACCCTGatgtTTCAACCGCAGCAGCTGCTAGAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAgGCTTTCAGTGACAAAAGTAGAGACTATACAGTACCACAAGTTCCTGTAACAGCTTGGCAAAATCCTCAGGCTGCACCAATGTACCCTACCAGTTCCCCTGGTTTTCAGACTCAAGTTCCAGGAGGACAAGTGCCATCATGGGATCTAACTCAGCATGCAGTTAGACCAGGTTATGTATCTGTTCCCGGTCCTTATCCTGTTCAAACTGGTGCATTTCCTACTATGCCCGCCTATGCGTCCGCAGCTATGCCTACCGCTTCCTCTCCTCTTGCTCAAAGCAGCCATCCCGGGGCTCCACACAATGTAAATTTACAGCCTAGTGGTGGTTCAACTTTCGGTCCTGGTTCCTCGCCTCACATGCAAACCAGCTTTGGTGCTCAAGGATTGGTACGGCCTGGGGCTCCGCCAAATGTGAGACCTGGTGGTGATTCACCTTCAGGTCAGCATTACTACGGTTAG 1443 0.4317 MSTSTQHQFRYTQTPSKVLHLRNLPWECSEEELIELCNPFGRIINTKCNVGANRNQAFVEFVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDADTAASAREALDGRSIPRQNYFYHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNHSAIEGAAQPTIGPDGKRREPESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVSTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPQVPVTAWQNPQAAPMYPTSSPGFQTQVPGGQVPSWDLTQHAVRPGYVSVPGPYPVQTGAFPTMPAYASAAMPTASSPLAQSSHPGAPHNVNLQPSGGSTFGPGSSPHMQTSFGAQGLVRPGAPPNVRPGGDSPSGQHYYG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00166 480 Gene3D - 110 221 IPR012677 -
Tsu04g00166 480 Gene3D - 241 346 IPR012677 -
Tsu04g00166 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Tsu04g00166 480 Pfam RRM-like domain 242 320 IPR021790 -
Tsu04g00166 480 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Tsu04g00166 480 SUPERFAMILY RNA-binding domain, RBD 248 343 IPR035979 GO:0003676
Tsu04g00166 480 MobiDBLite consensus disorder prediction 415 452 - -
Tsu04g00166 480 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 449 - -
Tsu04g00166 480 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Tsu04g00166 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Tsu04g00166 480 Gene3D - 3 109 IPR012677 -
Tsu04g00166 480 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Tsu04g00166 480 SMART rrm1_1 246 316 IPR000504 GO:0003723
Tsu04g00166 480 SMART rrm1_1 18 91 IPR000504 GO:0003723
Tsu04g00166 480 SUPERFAMILY RNA-binding domain, RBD 112 209 IPR035979 GO:0003676
Tsu04g00166 480 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Tsu04g00166 480 PANTHER OS02G0789700 PROTEIN 2 449 - -
Tsu04g00166 480 MobiDBLite consensus disorder prediction 415 480 - -
Tsu04g00166 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 71 IPR000504 GO:0003723
Tsu04g00166 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00166 Tsu-Chr4 1592022 1598890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00166 212 308 Eukaryotic Initiation Factors Gene Family AT3G16380 25.490 1.31e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00166 K14948 - gmx:100788927 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00166 04 1592022 1598890 Tsu04g00166 04 1592022 1598890 ECH