Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00165 ATGTCTCTTCTTGTATTTCTTCTGGGAATTTTCTACTTGGTTTCACATGTAAATGGCTACGGTCGTCATGCGAGTTGGACTAATGCTCATGCTACTTTCTACGGCGGAAGTGATGCTTCCGGAACAATGGGTGGGGCTTGTGGATATGGAAACCTTTATAGCCAAGGTTATGGAACTAATACAGCAGCATTAAGCACTGCACTATTCAACAATGGATTGAGTTGTGGAGCATGTTATGAAATTAAATGTGTGAATGATCCACAATGGTGTATACCTGGATCCATATTAGTTACTGCCACTAATTTTTGTCCACCAGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTTTCTCAACCTATTTTTCAACACATTGCTCAATATAGGGCAGGGATTGTACCTGTTGCTTACAGAAGGGTAAGATGCAGAAGAAGAGGTGGAATAAGATTTACCATCAATGGTCATTCTTACTTCAATTTAGTACTTGTGACTAATGTTGGAGGTGCTGGTGATGTACATTCTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTACCTAAATGGACAAAGTCTTTCCTTTGTTGTTACCACAAGTAATGGTCATAGTGTGGTCTCATTCAATGCTGCTCCAGCTAGTTGGTCTTTTGGTCAAACCTACACAGGAAGACAGTTCAACTATTAA 729 0.4088 MSLLVFLLGIFYLVSHVNGYGRHASWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCVNDPQWCIPGSILVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPASWSFGQTYTGRQFNY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00165 242 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Tsu04g00165 242 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Tsu04g00165 242 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Tsu04g00165 242 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Tsu04g00165 242 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Tsu04g00165 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Tsu04g00165 242 SMART dpbb_1 61 138 IPR007112 -
Tsu04g00165 242 PANTHER EXPANSIN 5 241 - -
Tsu04g00165 242 Gene3D - 15 144 IPR036908 -
Tsu04g00165 242 Pfam Lytic transglycolase 61 138 IPR009009 -
Tsu04g00165 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Tsu04g00165 242 SUPERFAMILY Barwin-like endoglucanases 8 166 IPR036908 -
Tsu04g00165 242 PANTHER EXPANSIN-A15 5 241 IPR002963 GO:0009664
Tsu04g00165 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Tsu04g00165 242 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Tsu04g00165 242 Gene3D - 148 240 IPR036749 -
Tsu04g00165 242 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Tsu04g00165 242 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Tsu04g00165 242 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00165 Tsu-Chr4 1581847 1584267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00165 1 240 Expansin Gene Family AT2G03090 77.912 1.78e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00165 K20628 - gmx:100790170 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00165 04 1581847 1584267 Tsu03g01624 03 16194934 16197323 ECH
Tsu04g00165 04 1581847 1584267 Tsu04g00165 04 1581847 1584267 ECH
Tsu04g00165 04 1581847 1584267 Tsu06g02121 06 26605037 26607716 ECH
Tsu05g01898 05 20867566 20870093 Tsu04g00165 04 1581847 1584267 ECH