Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00152 ATGAATATGGGAGGTAGCATCACTAGACAAGACCAAGTTGAAATTTCCATAGAAGGATTGAGTGAATCTTTAGAAGCTGCAAAGTTTAAGAACCCTAATGACAATGACAAAGTATGTGAAGAACAAGTTGAAAAAACTGAACCAAAAGGAGAATGTCGCTATTGTCATGAAGAAGAATTTGTTTCTAAGCTTGAAGCACCATGTAGCTGTGATGGAAGCTTAAAgTATGCTCACAGGAAATGTGTTTCTCATTGGATCAATGTCAAACGCAACATAATATGTGAGATCTGCAAGCAGGTTTACCATCCAAATTATTCAGTGATCGGACCTCCTCCTTTGGATGACATTGACATGAGTGAGCTATGGAGAATTCCGGGAACAAACATTAGAGTGATGTCACCACTTCAACTGATACAACATGGCGTAAATCGCCTTCTCCGTTCAATGAATACAGACTTCACATTGAGAAATCCTTCTGCAGGCGTCATTTTTGGAACACTACTCCTTGTGTTTTTTGTTGGGATGATTATAAGGGATGCATATTACTATACTCCACCCAAGGAAGATAAAATTTCTTGCATTATGTACATTGGTATGATCATGATCTCTGTGCCTATCTATATTATGACATGGATTTTGGAATGCAGaGCTCATAGAGAGCGTCATCCACAGTGA 675 0.3852 MNMGGSITRQDQVEISIEGLSESLEAAKFKNPNDNDKVCEEQVEKTEPKGECRYCHEEEFVSKLEAPCSCDGSLKYAHRKCVSHWINVKRNIICEICKQVYHPNYSVIGPPPLDDIDMSELWRIPGTNIRVMSPLQLIQHGVNRLLRSMNTDFTLRNPSAGVIFGTLLLVFFVGMIIRDAYYYTPPKEDKISCIMYIGMIMISVPIYIMTWILECRAHRERHPQ 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00152 224 CDD RING_CH-C4HC3_MARCH 52 98 - -
Tsu04g00152 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 103 IPR013083 -
Tsu04g00152 224 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 30 220 IPR033275 -
Tsu04g00152 224 SUPERFAMILY RING/U-box 49 102 - -
Tsu04g00152 224 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 30 220 - -
Tsu04g00152 224 Pfam RING-variant domain 52 97 IPR011016 GO:0008270
Tsu04g00152 224 ProSiteProfiles Zinc finger RING-CH-type profile. 44 104 IPR011016 GO:0008270
Tsu04g00152 224 SMART ringv_2 51 98 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00152 Tsu-Chr4 1469567 1472026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00152 48 100 C3H Transcription Factor Family AT2G37950 39.286 6.89e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00152 - - cam:101504331 322.013