Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g00150 | ATGAACTCCACACAGTGGGCTACACTTACCGAGTTTGTTAAGCACTTAGGCCGAACGGGACAGTGTAAGGTTGAAGAAACACCTAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTtaaggagaagatgaagaataagAGAATCAAGGCAGATATGGTAGATGAAGAAAAGCAAGAGAAGGAGATTAGAAAACAGATTGAAAGGGCTGAGCAATTGATGCAACTATCGAATCCAGAGTCAGATCATGATCAGCCTTCACAAGTAGAGCCTCCAAGGGAACTAAATATAAAAGATGGAACCAAGATAGAATTTTCTCTTGCGTCGTTAGCTAGACCTGTGACCAAAGAAAAACACGAGGAGACATCAAGAGTGGTATTTGATGAGGTTGATGATGAGAAATTTGagggaaaaaacaatttgaagaGGAAACaaagtggtggtggtggtggaaaaTCAATTTTGGAAGATATGATAAGGGAagaagagaggaaaaaagaaaaaattaatagaaaagaTTATTGGTTGCATGAGGGAATTGTTGTCAAGGTTATGAGCAAAGCCTTGGCAGAGAAAGGGTACTACAAGCAAAAGGGTGTTGTGAGAAAAGTGATTGACAAGTATATAGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTTAGAGTTGATCAGGAAGAGCTTGAAACTGTGATTCCACAGGTTGGTGGCTGTGTAAAAATTGTGAATGGCGCTTATCGCGGATCACTTGCTCGGCTATTAGGGGTGGATACAGATCATTTTTGTGCTAAGGTGCAGATAGAGAAAGGTGCTTATGATGGTAGGGTGTTTAAAGCTGTTGAATATGAGGATATTGTAAAGTAG | 876 | 0.3596 | MNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADMVDEEKQEKEIRKQIERAEQLMQLSNPESDHDQPSQVEPPRELNIKDGTKIEFSLASLARPVTKEKHEETSRVVFDEVDDEKFEGKNNLKRKQSGGGGGKSILEDMIREEERKKEKINRKDYWLHEGIVVKVMSKALAEKGYYKQKGVVRKVIDKYIGEIEMLESKHVLRVDQEELETVIPQVGGCVKIVNGAYRGSLARLLGVDTDHFCAKVQIEKGAYDGRVFKAVEYEDIVK | 291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00150 | 291 | Coils | Coil | 156 | 176 | - | - | |
| Tsu04g00150 | 291 | PANTHER | BNAA05G13760D PROTEIN | 1 | 291 | - | - | |
| Tsu04g00150 | 291 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 291 | IPR037321 | - | |
| Tsu04g00150 | 291 | Pfam | KN17 SH3-like C-terminal domain | 175 | 228 | IPR041330 | - | |
| Tsu04g00150 | 291 | Pfam | Domain of Kin17 curved DNA-binding protein | 1 | 71 | IPR019447 | - | |
| Tsu04g00150 | 291 | SMART | Kin17_mid_2 | 1 | 72 | IPR019447 | - | |
| Tsu04g00150 | 291 | Coils | Coil | 50 | 80 | - | - | |
| Tsu04g00150 | 291 | Gene3D | - | 183 | 236 | - | - | |
| Tsu04g00150 | 291 | CDD | KOW_KIN17 | 239 | 291 | IPR041995 | - | |
| Tsu04g00150 | 291 | Gene3D | - | 237 | 291 | IPR014722 | - | |
| Tsu04g00150 | 291 | Gene3D | - | 1 | 54 | IPR038254 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g00150 | Tsu-Chr4 | 1444198 | 1445179 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00150 | 1 | 291 | C2H2 Transcription Factor Family | AT1G55460 | 61.967 | 2.50e-122 | 354 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g00150 | K13102 | - | gmx:100785931 | 461.07 |