Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00149 ATGGACTTAACCCCAACCCCAAacccaacaacaacaccaacaccaacaacaaTACCAACAACCATTGTAACAACTACCTTAACTAAATCACCAGAACACCAACATGAAACCTCAACCCCCACAAAAATCACAACCTCAATAACTCCAAAAATCTCACCTTTTTCTAATGGTGTCCTCAAACGCCTCCACCACAATCACCACCACCTTAACAACCACCACCTTAACCACCACCAAGTAACTGTCACTTACAAAGAATGTCTCAAAAACCATGCAGCAAATTTAGGTGGTCATGCTCTCGACGGCTGTGGCGAATTCATGACATCTCCCACAGCAACATCCGCCGACCCAACATCGTTAAAATGCGCCGCTTGTGGCTGTCACCGTAATTTCCACCGCCGTGAACCAGAAGAACCACCACTTTCAACCACCACACATGTCATTGAATATCAACCTCACCACCGTCATCAGCCACTTCCACCGCCGCCTTTTTCTAACCGTAGCCCAAATTCTTCCTCTCCACCGCCGATCTCCTCCACTTACTACCCTTCTGCACCTCATATGCTTCTTGCTCTCTCCACCGCCTTACCGGAAAATGTCTCCGGACCCATGATCTCACCTGGGTCCCACACTAGAAAACGTTTCAGAACAAAATTCACTCAAGATCAGAAAGAAAAGATGTTGAAATTTGCTGAGAAAGTTGGATGGAAGATGCAGAAAAAAGATGATGAATTTACTCATGAGTTTTGTAATGAAATTGGTGTTGATCGAAGTGTTCTTAAAGTTTGGATGCATAACAACAAGAACACTTTCTCTAAACGAgaaaacaacaacatcaacaacattaACAACAACAATGAGATTAATGTTGTTGCTGGTGTGAAAAGTTTTCTACcttatgaagatgaagaaaacaaGATGAAGAATAACATTAACAAAGATGATATGAATCATGTTGAGATTCATAGTCTTAATCATTACCAGAATGATGGTGGAGTTGTTCGTGCTAAtggttcatcttcttcttcttaa 1029 0.3868 MDLTPTPNPTTTPTPTTIPTTIVTTTLTKSPEHQHETSTPTKITTSITPKISPFSNGVLKRLHHNHHHLNNHHLNHHQVTVTYKECLKNHAANLGGHALDGCGEFMTSPTATSADPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSNRSPNSSSPPPISSTYYPSAPHMLLALSTALPENVSGPMISPGSHTRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDDEFTHEFCNEIGVDRSVLKVWMHNNKNTFSKRENNNINNINNNNEINVVAGVKSFLPYEDEENKMKNNINKDDMNHVEIHSLNHYQNDGGVVRANGSSSSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00149 342 SUPERFAMILY Homeodomain-like 203 272 IPR009057 -
Tsu04g00149 342 MobiDBLite consensus disorder prediction 26 48 - -
Tsu04g00149 342 MobiDBLite consensus disorder prediction 154 169 - -
Tsu04g00149 342 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 82 134 IPR006456 -
Tsu04g00149 342 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 211 268 IPR006455 -
Tsu04g00149 342 MobiDBLite consensus disorder prediction 151 179 - -
Tsu04g00149 342 Gene3D - 200 272 - -
Tsu04g00149 342 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 12 288 - -
Tsu04g00149 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 134 IPR006456 -
Tsu04g00149 342 Pfam ZF-HD protein dimerisation region 81 135 IPR006456 -
Tsu04g00149 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00149 Tsu-Chr4 1431862 1433472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00149 20 267 ZF-HD Transcription Factor Family AT5G15210 52.800 5.63e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu04g00149 ZF-HD_dimer 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00149 - - jre:108985975 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02110 06 26501907 26503319 Tsu04g00149 04 1431862 1433472 PCT