Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00148 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGTGTAAAGAAAGGACCATGGACACCTGAAGAAGATATCATACTTGTTACTTATATACAAGAAAATGGTCCTGGAAATTGGAGGGCTGTTCCAACCAAGACAGGGTTGTCAAGATGCAGCAAGAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCAGGAATCAAAAGGGGTAACTTCACTGATCAAGAGGAGAAGATGATTATCCATCTTCAAGATCTTTTAGGAAATAGATGGGCTGCAATAGCATCATACCTTCCACAAAGAACAgataatgacataaaaaattattggaaCACTCATTTGAAAAAGAAGCTCAAGAAATTGCAAacaggtaataataataataattctgaaggaaattttgaagaagaaaatttttCAGCATCACAAAGAATTCCTAGAGGTCAATGGGAAAGAAGACTTCAAACAGATATTCAAATGGCCAAAAAAGCACTTAATGAAGCACTTTCAGTTTCACCACAAAAATTATCTTCTAATAATTTTTCCACTTCAAACCTTTCTAATAGTAACTCTATTTCTTCCACTAAAGAATTACCACAATCTATTTGCTATGCTTCAAGTGCTGATAACATAGCTAGGTTATTAAAGGGTTGGATGAAAAATCCAATAAAATCATCTAGAAGTACTAATTCATCTGTGGCACAAAATTCCTTCAACAACATTGATTGTGTTTCTAGTAGTGGAACAAAGGGTGAAAATGAAATATTGTCCGAGACTTTTGAATCTTTGTTTGGTTTTGAGTCTTTGGAATCTTTGGAGTCTTCGAATTCCGAATTCTCTCATCAATCTTTGTCGCCGGACGCAACGGTTTTACAAGATGAAAGTAAGCCTGAAGATGTCGGTTCAGAAACAATGCCATTTTCTTTGCTTGAGAAATGGCTTCTTGATGAAGCTAGTTGTCTTGAGAAAGTCGGATTAGGTTGTGGTGATCATGCTCAGGTGTTCTAG 1002 0.3443 MGRPPCCDKEGVKKGPWTPEEDIILVTYIQENGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGNNNNNSEGNFEEENFSASQRIPRGQWERRLQTDIQMAKKALNEALSVSPQKLSSNNFSTSNLSNSNSISSTKELPQSICYASSADNIARLLKGWMKNPIKSSRSTNSSVAQNSFNNIDCVSSSGTKGENEILSETFESLFGFESLESLESSNSEFSHQSLSPDATVLQDESKPEDVGSETMPFSLLEKWLLDEASCLEKVGLGCGDHAQVF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00148 333 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 324 - -
Tsu04g00148 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu04g00148 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g00148 333 CDD SANT 16 61 IPR001005 -
Tsu04g00148 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu04g00148 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 324 - -
Tsu04g00148 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g00148 333 Gene3D - 13 66 - -
Tsu04g00148 333 Gene3D - 69 139 - -
Tsu04g00148 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g00148 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu04g00148 333 CDD SANT 69 111 IPR001005 -
Tsu04g00148 333 SMART sant 13 63 IPR001005 -
Tsu04g00148 333 SMART sant 66 114 IPR001005 -
Tsu04g00148 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu04g00148 333 MobiDBLite consensus disorder prediction 120 140 - -
Tsu04g00148 333 MobiDBLite consensus disorder prediction 275 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00148 Tsu-Chr4 1405373 1407801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00148 1 333 MYB Transcription Factor Family AT5G62470 49.311 4.85e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00148 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00148 K09422 - gmx:778080 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02103 06 26399794 26401750 Tsu04g00148 04 1405373 1407801 PCT