Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00141 ATGTCTAGCAGAAGATCAAGGCAACAATCAGGAGGGTCTACAAGAATATCAGATGATCAAATTATTGATCTTGTTTGCAAGTTGCGTCAACTTGTTCCAGAAATTCGCAATAGGCGCTCCGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACTTGCAACTATATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCATGCGTTTGTCTCAATTGTTGGCTACAATTGATGCTGATAGTGCTGAAGCTTCTATCATTAGGAGCCTACTTAACCAATGA 282 0.3972 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSMRLSQLLATIDADSAEASIIRSLLNQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00141 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Tsu04g00141 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Tsu04g00141 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tsu04g00141 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 79 IPR036638 GO:0046983
Tsu04g00141 93 Gene3D - 15 88 IPR036638 GO:0046983
Tsu04g00141 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Tsu04g00141 93 Coils Coil 49 76 - -
Tsu04g00141 93 CDD bHLH_AtPRE_like 12 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00141 Tsu-Chr4 1330691 1332310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00141 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 3.71e-34 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g00141 HLH 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00141 - - jre:109002575 143.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00141 04 1330691 1332310 Tsu04g00141 04 1330691 1332310 ECH
Tsu04g00141 04 1330691 1332310 Tsu06g02077 06 25981734 25986206 ECH
Tsu05g01799 05 19205226 19206505 Tsu04g00141 04 1330691 1332310 ECH
Tsu08g01904 08 24091059 24093441 Tsu04g00141 04 1330691 1332310 ECH
Tsu06g02077 06 25981734 25986206 Tsu04g00141 04 1330691 1332310 PCT