Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g00137 | ATGGTTGGGACTGAATCTTCTACATTGACATCTCAACTTGAAATGGAAGCAAATGCTATATTGAATAGTGGATGGTGGAACACTTCTCTTGCATACTACGACATCTCCTATCGGTGTAATTGGAGGCAGATATCTTGCAACAATGCTGGAAGCATAATAAATATCAACATAGACGGTCTTGATACAAGTATGGGGGGCAACAATTTTGAAACACTCAACTTGTCTACTTTCCGCAATTTAGAAAGCCTTGTTATCAAGTATGTTGGACTACAAGGGACTATCCCAAAAGATATTGGTCTTCTCTCCAAGCTCACTCATCTTGATCTGGCTGGAAATCATCTTAAAGCTAAGATGCCTCTTTCACTAGGTAGTCTTAGACAATTAAAGTACTTAGACATTTCTGATAACTTCCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCTTGAAAAATCTCATAACACTAGACCTATCTCTAAATTCTCTTGAAGGTGAGATACCTCCTTCACTAAGAAATCTCAAACAATTAGAGTATCTATTCATCTATAACAACAATTTTCATGGTTCCATTCCTTTTGAGTTGGGGTTCCTAAAAAATCTTACTAGTTTATATCTATCTTATAATAGACTCAATAGAAACTTGCCTATTTCCCTTATAAATCTCACCAAATTAGAACAATTGGACATCTCTCACAATTTTCTCACCGGTTCCCTCCCATCTAACTTTGGTCAATTAAGTAACTTGCAAGAATTGTACTTAAACAACAACTCCTTCAGTGGAACCTTTCCTATTTCATTCAATAATCTCACACAATTAGTATACCTTgaaatttcatataattttcTCACTGGTTTCCTTCCAATTTCATTGAATAATCTCACACAGTTAAAAATCTTTAACATTTCCCACAATTTACTTCTTGGTACCCTTCATTCCAATTTGTTTTCATTGACATATAATATAACTGCCATTGACCTCAGTCACAACCTCATTAGTGGTGAAATTCCACATAGACTTGGACCATATCTACGAGTTaatttaaacaataataatCTCAGTGGAACAATTCCCCAATCAATTTGTAATGTCACTTATGTGAACATTTCCTACAATCATTTGAGGGGTCCCATCCCATCTTGTATTGATCCTTATGCAATAATAGAGAACAAGGATGTATGTACTAACCATTTATACGATCAAATCTACTTCCAACTGTGTCCTGCTCCAAAACACCATGTTGTCATTGTTCTTCCTATAGTTATTGTTCTAATTTTAGCATTCTCACTTCTCATGGGCTTGAAAGTTAAACATAATTCTATTAAGAACAAGTGTGCAAACACAACGACAGTAAAAAATGGAGATTTGTTTTGTATATGGAATTATGATGGCAAAATAGCATATGATGACATCATTAGAGCAACAGAAGACTTTGATATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCGCAATTACCATGTGGAAAAGTTGTTGCCTTAAAGAAACTCCACAGCTTTGAAGCAGAAGTTCCATCTTTTTATGAGAGTTTTAGAAATGAAGTGAGAATTTTAACAGAAATAAAGCATAAACATATTGTGAAGCTCTATGGATTTTGCTTACACAAAAGAATTATGTTTTTGATTTATCAGTATATGGAGAAAGGAAGTTTATTCTCAGTCTTGTATGATGATGTAGATGCCGTCGAATTCAAATGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCTGCTATATCATATCTTCATCATGATTTTACATCTCCAATAGTGCATAGAGACATATCTAGTGGCAATATCTTGTTGAACAATGAGTGGCAACCTAGTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATTGGATATATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGCGATGTATATGGCTTTGGTGTAGTGGCACTAGAAACTTTGATGGGAAAGCACCCTAAGGAAATATTGTCGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGAGATAATTCGTGTGGCCGTAATAGCATTTGCATGTTTAAATTTCAATCCTAGCTCTCGACCAACAATGATACGCGTGTCACAGAGTTTCGCCACTGAGCTTACACCATTAACTGTTCCTTTGAATGAAATTACATTGCAGCAGCTTATGAGTGAAGAACTCAAAGCATTATTTCATATCGTTAACCATTGA | 2334 | 0.353 | MVGTESSTLTSQLEMEANAILNSGWWNTSLAYYDISYRCNWRQISCNNAGSIININIDGLDTSMGGNNFETLNLSTFRNLESLVIKYVGLQGTIPKDIGLLSKLTHLDLAGNHLKAKMPLSLGSLRQLKYLDISDNFLQGSIPHELGFLKNLITLDLSLNSLEGEIPPSLRNLKQLEYLFIYNNNFHGSIPFELGFLKNLTSLYLSYNRLNRNLPISLINLTKLEQLDISHNFLTGSLPSNFGQLSNLQELYLNNNSFSGTFPISFNNLTQLVYLEISYNFLTGFLPISLNNLTQLKIFNISHNLLLGTLHSNLFSLTYNITAIDLSHNLISGEIPHRLGPYLRVNLNNNNLSGTIPQSICNVTYVNISYNHLRGPIPSCIDPYAIIENKDVCTNHLYDQIYFQLCPAPKHHVVIVLPIVIVLILAFSLLMGLKVKHNSIKNKCANTTTVKNGDLFCIWNYDGKIAYDDIIRATEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHSFEAEVPSFYESFRNEVRILTEIKHKHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVDAVEFKWRKRVNIVKGVASAISYLHHDFTSPIVHRDISSGNILLNNEWQPSVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYGFGVVALETLMGKHPKEILSSLQLASTQSMKLCQVLDQRLPFPNNAMVLLEIIRVAVIAFACLNFNPSSRPTMIRVSQSFATELTPLTVPLNEITLQQLMSEELKALFHIVNH | 777 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00137 | 777 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 215 | 770 | - | - | |
| Tsu04g00137 | 777 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 9 | 225 | - | - | |
| Tsu04g00137 | 777 | SUPERFAMILY | RNI-like | 74 | 417 | - | - | |
| Tsu04g00137 | 777 | Pfam | Leucine Rich Repeat | 223 | 244 | IPR001611 | GO:0005515 | |
| Tsu04g00137 | 777 | Gene3D | Phosphorylase Kinase; domain 1 | 459 | 555 | - | - | |
| Tsu04g00137 | 777 | SUPERFAMILY | Protein kinase-like (PK-like) | 459 | 742 | IPR011009 | - | |
| Tsu04g00137 | 777 | Pfam | Leucine rich repeat | 246 | 306 | IPR001611 | GO:0005515 | |
| Tsu04g00137 | 777 | Pfam | Leucine rich repeat | 126 | 186 | IPR001611 | GO:0005515 | |
| Tsu04g00137 | 777 | Gene3D | Transferase(Phosphotransferase) domain 1 | 556 | 750 | - | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 293 | 317 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 269 | 292 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 101 | 125 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 149 | 173 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 221 | 244 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 245 | 268 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_typ_2 | 197 | 220 | IPR003591 | - | |
| Tsu04g00137 | 777 | SMART | LRR_sd22_2 | 269 | 290 | - | - | |
| Tsu04g00137 | 777 | SMART | LRR_sd22_2 | 101 | 122 | - | - | |
| Tsu04g00137 | 777 | SMART | LRR_sd22_2 | 197 | 218 | - | - | |
| Tsu04g00137 | 777 | SMART | LRR_sd22_2 | 221 | 250 | - | - | |
| Tsu04g00137 | 777 | SMART | LRR_sd22_2 | 149 | 175 | - | - | |
| Tsu04g00137 | 777 | Gene3D | Ribonuclease Inhibitor | 167 | 452 | IPR032675 | - | |
| Tsu04g00137 | 777 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 601 | 613 | IPR008266 | GO:0004672|GO:0006468 | |
| Tsu04g00137 | 777 | ProSiteProfiles | Protein kinase domain profile. | 477 | 745 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu04g00137 | 777 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 215 | 770 | - | - | |
| Tsu04g00137 | 777 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 9 | 225 | - | - | |
| Tsu04g00137 | 777 | Pfam | Protein kinase domain | 483 | 741 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu04g00137 | 777 | Gene3D | Ribonuclease Inhibitor | 8 | 166 | IPR032675 | - | |
| Tsu04g00137 | 777 | ProSitePatterns | Protein kinases ATP-binding region signature. | 483 | 505 | IPR017441 | GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g00137 | Tsu-Chr4 | 1294652 | 1297175 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00137 | 80 | 649 | Receptor kinase-like Gene Family | AT4G08850 | 38.655 | 6.36e-121 | 386 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Tsu04g00137 | Pkinase | 1.2e-43 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g00137 | - | - | mtr:MTR_7g009970 | 1015.37 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu04g00137 | 04 | 1294652 | 1297175 | Tsu04g00137 | 04 | 1294652 | 1297175 | ECH |