Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00136 ATGTGGAAGTTCCTTCTTGTTATTTGTGGTTTGGTCGTAGGGACTGATTCTGCCACAGTGATATCTCAACTTGAAATGGAAGCAAATGCTATTCAGAATAGTAGATGGTGGAATACTTCTGATGCATACTTCAATATCTCCCATCATTGTAATTGGTTTGAAATAACTTGCAACGATGCTGGAAGTATAAAAGCAATCCACATAAACCCTAAACGTATACATACCGAAGCATTATCGGAGAATCATTTTGCAACGCTTAACTTGTCTGCTTTCAACAATTTAGAAAGCCTTGTTATTAGACAAATTGGACTACAAGGGACTATTCCCACAGAAATTGGTCATCTCTCCAAACTCACTCATCTTGATATGTCTGACAATTTTCTTGAAGGTAAGATACCTCTTTCGATAGGTAGCCTTAGACAATTAAGATACCTAGACATCTCTTACAACAAACTTGATGGGTCTATTCCTATTGGCTTGAGTTTCATTAAAAATCTCACTACATTAATTCTATCTAATAACTTCTTTAATGGGAGTTTTCCATTTTTCATCATAGGAATTGAACTAACTCATCTTGATTTGTCTAGAAATTATCTTGAGGGTGAGGTACATCCTTCAATTGGAAACCTTAGAAAATTAGAGTACCTAGACCTATCTTTTAACAATTTTCAAGGTTCTATCCCTTCTGAGTGGTGGTTCCTAAAAAATCTCACTACATTAAATCTATCTAACAATAGATTCAAAGGTGAGATACATTCTTCGCTAGAAAATCTCAAAAAATTAGAGTACTTAGACATCTCTAACAACTATATTCAAAGTTCTATTCCTCTTAAGTTGGGGTTCCTGAAAAATCTCACAACATTAAATCTATCTCAcaatagattcaatagaagCTTGCCTATATCCCTTATAAATCTCACACAATTACAATATCTTGATTTCTCATACAATTTTCTCACTGGTTCCCTTCCATCAAACTTTGGTCAATTAAGCAAATTGCAAGTGTTGCAGTTAAACAATAACTCCATCGGTGGGATCTTTCCCATTTCATTGAATAATCTTTCTCAATTAGAAATTCTTGACATTTCACACAACTTTCTTCTTGGTACACTTCCTTCCAAAAAATTTCCATTGACTAATAACAAAATTTCTATTGACCTTAGTCACAACTTCATTAGTGGTAAAATTCCATCTCAGTTTGTGCAATTTGACCAACTtaatttaagcaataataatcTCATAGGAACAGTTCCACAATCTATTTGTAATCACAGTCACAATTTCATAAATGTGGACATTTCCTACAATGATTTGAAGGGTCCCATTCCAAATTGTATTGATCCTCACATGATAATAGGGAACAAGCATGTCTGTAGTGACATTTTACATGAACAAATCAACTTCCACTTTCAAGCTTGCAAGAAAAGTTATAAAGTAAAGCCCATTATTGTCATTGTTCTTCCTATCCTCATTATTTTAACCCTAGCCTTCTCATTTCTCATATGCTTCATTCTTGGCCATAATTCTATTAAGAACAAGAGTGCAGGCACAACAGCAATAGCGAAGAATGGGGATTTGTTTTGCATATGGAATTATGATGGCAAAATAGCATATGAGGACATTATCAGAGCAACAGAAGACTTTGACATGAGGTATTGTATTGGAACAGGAGCATATGGAAGTGTTTACAAGGTGCAATTACCATGTGGAAAAGTTGTAGCGTTAAAGAAACTTCATGGATACGAAGCAGAAATGCCGGCTTTTGATGAAAGTTTTAGAAATGAAGTGAAAATATTATCAGAAATAAAACACCGGCATATTGTTAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATTTATCAATACATGGAGAAAGGAAGTTTGTTCTCTGTCCTGTATGATGATGTAGATGCCATGGAATTCAATTGGAGAAAAAGAGTTAACATTGTTAAAGGAGTTGCATCCGCTCTATCATATCTTCATCATGATTTTACGTCTCCAATAGTGCATAGAGACGTATCCAGTGGCAATATCTTGCTGAACAATGAGTGGCAGCCTAGTGTTTCAGATTTTGGCTCAGCTCGACTCCTTCAATATGATTCATCCAATCGAACAATAGTTGCTGGAACAATTGGATACATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGTGATGTATATAGCTTTGGAGTAGTGGCACTAGAGACTTTATTGGGAAGGCACCCTCAGGAAATATTGTCATCACTTCAATTAGCATCAACTCAAAGCATGAAATTGTGTGAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCAATGGTTTTACTTGACATAATTCGTGTTGCCGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACAATGAAATGTGTGTCACAGAGTTTTGTGAATGAGCTTACACCATTAACCATTCCCTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAATTCAAAGCATTATTTCATATTCTCAATCTGAACCATTGA 2553 0.3482 MWKFLLVICGLVVGTDSATVISQLEMEANAIQNSRWWNTSDAYFNISHHCNWFEITCNDAGSIKAIHINPKRIHTEALSENHFATLNLSAFNNLESLVIRQIGLQGTIPTEIGHLSKLTHLDMSDNFLEGKIPLSIGSLRQLRYLDISYNKLDGSIPIGLSFIKNLTTLILSNNFFNGSFPFFIIGIELTHLDLSRNYLEGEVHPSIGNLRKLEYLDLSFNNFQGSIPSEWWFLKNLTTLNLSNNRFKGEIHSSLENLKKLEYLDISNNYIQSSIPLKLGFLKNLTTLNLSHNRFNRSLPISLINLTQLQYLDFSYNFLTGSLPSNFGQLSKLQVLQLNNNSIGGIFPISLNNLSQLEILDISHNFLLGTLPSKKFPLTNNKISIDLSHNFISGKIPSQFVQFDQLNLSNNNLIGTVPQSICNHSHNFINVDISYNDLKGPIPNCIDPHMIIGNKHVCSDILHEQINFHFQACKKSYKVKPIIVIVLPILIILTLAFSFLICFILGHNSIKNKSAGTTAIAKNGDLFCIWNYDGKIAYEDIIRATEDFDMRYCIGTGAYGSVYKVQLPCGKVVALKKLHGYEAEMPAFDESFRNEVKILSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVDAMEFNWRKRVNIVKGVASALSYLHHDFTSPIVHRDVSSGNILLNNEWQPSVSDFGSARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLLGRHPQEILSSLQLASTQSMKLCEVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKCVSQSFVNELTPLTIPLSEISMQQLMSQEFKALFHILNLNH 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00136 850 ProSiteProfiles Leucine-rich repeat profile. 236 259 IPR001611 GO:0005515
Tsu04g00136 850 Gene3D Ribonuclease Inhibitor 275 380 IPR032675 -
Tsu04g00136 850 Gene3D Ribonuclease Inhibitor 381 467 IPR032675 -
Tsu04g00136 850 Gene3D Ribonuclease Inhibitor 187 274 IPR032675 -
Tsu04g00136 850 SUPERFAMILY Protein kinase-like (PK-like) 534 813 IPR011009 -
Tsu04g00136 850 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 229 841 - -
Tsu04g00136 850 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Tsu04g00136 850 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 247 - -
Tsu04g00136 850 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Tsu04g00136 850 Pfam Leucine rich repeat 308 365 IPR001611 GO:0005515
Tsu04g00136 850 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Tsu04g00136 850 SUPERFAMILY RNI-like 89 436 - -
Tsu04g00136 850 SMART LRR_sd22_2 115 136 - -
Tsu04g00136 850 SMART LRR_sd22_2 282 303 - -
Tsu04g00136 850 SMART LRR_sd22_2 258 279 - -
Tsu04g00136 850 SMART LRR_sd22_2 354 389 - -
Tsu04g00136 850 SMART LRR_sd22_2 234 257 - -
Tsu04g00136 850 SMART LRR_sd22_2 139 168 - -
Tsu04g00136 850 SMART LRR_sd22_2 306 332 - -
Tsu04g00136 850 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 229 841 - -
Tsu04g00136 850 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 20 247 - -
Tsu04g00136 850 ProSiteProfiles Leucine-rich repeat profile. 260 283 IPR001611 GO:0005515
Tsu04g00136 850 ProSitePatterns Tyrosine protein kinases specific active-site signature. 672 684 IPR008266 GO:0004672|GO:0006468
Tsu04g00136 850 ProSitePatterns Protein kinases ATP-binding region signature. 554 576 IPR017441 GO:0005524
Tsu04g00136 850 ProSiteProfiles Leucine-rich repeat profile. 284 307 IPR001611 GO:0005515
Tsu04g00136 850 Gene3D Transferase(Phosphotransferase) domain 1 627 821 - -
Tsu04g00136 850 ProSiteProfiles Protein kinase domain profile. 548 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00136 850 PRINTS Leucine-rich repeat signature 354 367 - -
Tsu04g00136 850 PRINTS Leucine-rich repeat signature 142 155 - -
Tsu04g00136 850 Pfam Protein kinase domain 554 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00136 850 Pfam Leucine Rich repeat 210 225 IPR001611 GO:0005515
Tsu04g00136 850 Gene3D Phosphorylase Kinase; domain 1 511 626 - -
Tsu04g00136 850 SMART LRR_typ_2 282 305 IPR003591 -
Tsu04g00136 850 SMART LRR_typ_2 330 353 IPR003591 -
Tsu04g00136 850 SMART LRR_typ_2 115 139 IPR003591 -
Tsu04g00136 850 SMART LRR_typ_2 306 329 IPR003591 -
Tsu04g00136 850 SMART LRR_typ_2 210 233 IPR003591 -
Tsu04g00136 850 SMART LRR_typ_2 354 378 IPR003591 -
Tsu04g00136 850 SMART LRR_typ_2 234 258 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00136 Tsu-Chr4 1270788 1289063 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00136 60 720 Receptor kinase-like Gene Family AT4G08850 37.518 2.00e-133 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g00136 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00136 - - mtr:MTR_8g047210 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00136 04 1270788 1289063 Tsu04g00136 04 1270788 1289063 ECH