Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00134 ATGGTctttgttcttattattattatttggggTTTGATGGTTGGGACTGAATCTGCTACAATGACATCTCAACTTAAAATGGAAGCAAATGCTATATTCAAAAGTAGATGGTGGAACACTTCTGATGCTAAATACAACATCTCCAATCGGTGTAATTGGAGTCAGATATCTTGCAACCTAGCTGGAAGCATAATAAATATCAACATAGACTATCTTTATACAGGTATGCGGGTCAACAATTTAGAAACACTCAAGTTGTCTACTTTCCACAATTTAGAAATCCTTGTTATCTCGTATGTTGGACTACAAGGGACTATCCCGAAAGAAATTGGCCTTCTCTACAAGCTCACCTATCTTGATCTGTCTGGAAATTCTCTTGAAGGTGAGATACCTCCTTCACTAGGTAGTCTTAGAAAATTAAAGTACTTAGACATTTCTAACAACTCCCTTCAAGGTTCTATTCCTCATGAGTTGGGATTCTTGAAACATCTCACAACACTAGTTCTATCTCAAAATTCTCTTGAAGGTGAGATACCTCCTTCACTAGGTAATCTCAAACAATTAGAGTATCTAGCCATCTCTTTCAACAATTTTCATGGTTCCATTCCTATTGAGTTGGGGTTCCTAAAAAATCTTACTAAAATTGGTCTTCTCTACAAGCTCACCCATCTTGATCTGTCTCGAAATTCTCTTGAAGGTAACATACCTCCTTCACTAGGCAGTTTTAGACAATTAAAGTACTTAGACATTTCTAACAACTCCCTTCAAGGTTCTATTCCCCATGAGTTGGGATTCTTGAAAAATCTCACAACACTACTTCTATCTCAAAATTCTCTTGAAGGTGAGATACCTCCTTCGCTAGGAAATCTGAAACAATTAGAGTATCTATCCATCTCTCACAACAACATTCAAGGTTCCATTCCTATTGAGTTTGGGTTCCTAAAAAATCTTACTACATTATATCTATCTTATAATAGACTCGATAGAAACTTGCCTATTTCATTTATAAATCTCACTAAATTAGAAGAATTGCACCTCTCTTCCAATTATCTCACAGGGACTATCCCAAAAGATATTGGTCTTCTCTCCAAGCTCACCCATCTTGATCTGTCTATAAATTCTCTTGAAGGTAACATACCTCCTTTACTAGGTAGTCTTAGACAATTAAAGTACTTAGACATTTCTGATAACTTCCTTCAAGGTTCCATTCCTCATGAGTTGGGATTCTTGAAAAATCTCACAACACTACATCTATCTCTAAATTCTCTTGAAGGTGAGATACCTCCTTCGCTAGGAAATCTGAAACAATTAGATTACTTAGACATCTCTGACAACAACATTCAAGGTTCCATTCCTATTGAGTTGGGGTTCCTAAAAAACCTTACTAGTTTAGATCTATCTAATAATAGACTCAATAGAAACTTGCCTATTTCCCTTATAAATCTCACCAAATTAGAATACCTGGACATCTCTTCCAATTATCTCACAGGTTCCCTCCCATCTAACTTTGGTCAATTAAGTAACTTGCAATTCTTTCACAACCTCATTAGTGGTGAAATTCCACATAGACTTGGACCATTCCTACGAGTTaatttaaacaataataatCTCAGTGGAACAATTCCCCAATCAATTTGTAATGTCCCTTATGTGAACATTTCCTACAATCATTTGAGGGGTCCCATCCCATTTTGTATTGATCCTTATGCAATAATAGGGAACAAGGATGTATGTACTAACTATTTATACGATCAAATCTACTTCCAACTGTGTCCTGCTCCAAAACACCATGTTGTCATTGTTCTTCCTATAGTTATTGTTCTAATTTTAGCATTCTCACTTCTCATGGGCTTGAAAGTTAAACATAATTCTATTAAGAACAAGCGTGCAAACACAACGACAGTAAAAAATGGAGATTTGTTTTGTATATGGAATTATGATGGCAAAATAGCATATGATGACATTATCACAGCAACAGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCGCAATTACCATGTGGAAAAGTTGTTGCCTTAAAGAAACTCCATAGCTTTGAAGCAGAAGTTCCATCTTTTTATGAGAGTTTTAGAAATGAAGTGAGAATTTTAACAGAAATAAAGCATAAACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATTATGTTTTTGATCTATCAATACATGGAGAAAGGAAGTTTGTTCTCTGTCTTGTATGATGATGTAGAGGCCGTCGAATTCAAATGGAGAAAAAGGGTTAACATTGTTAAAGGAGTTGCATCTGCTATATCATATCTTCATCATGATTTTACATCTCCAATAGTGCATAGAGACATATCTAGTGGCAATATCTTGTTGAACAATGAGTGGCAGCCTAGTGTTTCCGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATTGGGTATATAGCTCCTGAGCTTGCTTATACTATGGTTGTGAGTGAAAAGTGCGATGTCTATAGCTTTGGAGTAGTGGCACTAGAAACGTTGATGGGAAAGCACCCTCAGGAAATATTGTCGTCACTTCAATTAGCATTAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGACATAATTCGTGTAGCCGTAATAGCATTTGCATGTTTAAATTTCAATCCTAGCTCTCGACCAACAATGAAACGTGTGTCTCAGAGTTTTGCCACTAAACTTACACCATTAACCATTCCTTTGAATGAAATTTCATTGCAGCAGCTTATGAGTGAAGAACTCAAAGCATTATTTCATATTGTTAACCATTGA 2889 0.3572 MVFVLIIIIWGLMVGTESATMTSQLKMEANAIFKSRWWNTSDAKYNISNRCNWSQISCNLAGSIININIDYLYTGMRVNNLETLKLSTFHNLEILVISYVGLQGTIPKEIGLLYKLTYLDLSGNSLEGEIPPSLGSLRKLKYLDISNNSLQGSIPHELGFLKHLTTLVLSQNSLEGEIPPSLGNLKQLEYLAISFNNFHGSIPIELGFLKNLTKIGLLYKLTHLDLSRNSLEGNIPPSLGSFRQLKYLDISNNSLQGSIPHELGFLKNLTTLLLSQNSLEGEIPPSLGNLKQLEYLSISHNNIQGSIPIEFGFLKNLTTLYLSYNRLDRNLPISFINLTKLEELHLSSNYLTGTIPKDIGLLSKLTHLDLSINSLEGNIPPLLGSLRQLKYLDISDNFLQGSIPHELGFLKNLTTLHLSLNSLEGEIPPSLGNLKQLDYLDISDNNIQGSIPIELGFLKNLTSLDLSNNRLNRNLPISLINLTKLEYLDISSNYLTGSLPSNFGQLSNLQFFHNLISGEIPHRLGPFLRVNLNNNNLSGTIPQSICNVPYVNISYNHLRGPIPFCIDPYAIIGNKDVCTNYLYDQIYFQLCPAPKHHVVIVLPIVIVLILAFSLLMGLKVKHNSIKNKRANTTTVKNGDLFCIWNYDGKIAYDDIITATEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHSFEAEVPSFYESFRNEVRILTEIKHKHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDVEAVEFKWRKRVNIVKGVASAISYLHHDFTSPIVHRDISSGNILLNNEWQPSVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGKHPQEILSSLQLALTQSMKLCQVLDQRLPFPNNAMVLLDIIRVAVIAFACLNFNPSSRPTMKRVSQSFATKLTPLTIPLNEISLQQLMSEELKALFHIVNH 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00134 962 ProSiteProfiles Leucine-rich repeat profile. 460 483 IPR001611 GO:0005515
Tsu04g00134 962 SMART LRR_typ_2 362 386 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 314 337 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 266 290 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 410 434 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 482 506 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 458 481 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 338 361 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 218 242 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 161 185 IPR003591 -
Tsu04g00134 962 SMART LRR_typ_2 113 137 IPR003591 -
Tsu04g00134 962 Pfam Leucine Rich Repeat 388 409 IPR001611 GO:0005515
Tsu04g00134 962 Pfam Leucine Rich Repeat 484 505 IPR001611 GO:0005515
Tsu04g00134 962 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Tsu04g00134 962 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Tsu04g00134 962 Pfam Leucine rich repeat 287 327 IPR001611 GO:0005515
Tsu04g00134 962 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Tsu04g00134 962 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 337 487 - -
Tsu04g00134 962 SUPERFAMILY L domain-like 36 214 - -
Tsu04g00134 962 Pfam Protein kinase domain 668 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00134 962 SUPERFAMILY RNI-like 216 552 - -
Tsu04g00134 962 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Tsu04g00134 962 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 20 217 - -
Tsu04g00134 962 Gene3D Transferase(Phosphotransferase) domain 1 741 935 - -
Tsu04g00134 962 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 262 342 - -
Tsu04g00134 962 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 474 955 - -
Tsu04g00134 962 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 214 284 - -
Tsu04g00134 962 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 262 342 - -
Tsu04g00134 962 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 217 - -
Tsu04g00134 962 SUPERFAMILY Protein kinase-like (PK-like) 645 927 IPR011009 -
Tsu04g00134 962 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 474 955 - -
Tsu04g00134 962 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 337 487 - -
Tsu04g00134 962 Gene3D Ribonuclease Inhibitor 217 331 IPR032675 -
Tsu04g00134 962 SMART LRR_sd22_2 113 145 - -
Tsu04g00134 962 SMART LRR_sd22_2 266 281 - -
Tsu04g00134 962 SMART LRR_sd22_2 314 346 - -
Tsu04g00134 962 SMART LRR_sd22_2 290 311 - -
Tsu04g00134 962 SMART LRR_sd22_2 482 511 - -
Tsu04g00134 962 SMART LRR_sd22_2 362 394 - -
Tsu04g00134 962 SMART LRR_sd22_2 218 250 - -
Tsu04g00134 962 SMART LRR_sd22_2 161 187 - -
Tsu04g00134 962 SMART LRR_sd22_2 458 479 - -
Tsu04g00134 962 SMART LRR_sd22_2 434 455 - -
Tsu04g00134 962 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 214 284 - -
Tsu04g00134 962 ProSiteProfiles Protein kinase domain profile. 662 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00134 962 Gene3D Phosphorylase Kinase; domain 1 620 740 - -
Tsu04g00134 962 PRINTS Leucine-rich repeat signature 140 153 - -
Tsu04g00134 962 PRINTS Leucine-rich repeat signature 458 471 - -
Tsu04g00134 962 Gene3D Ribonuclease Inhibitor 332 587 IPR032675 -
Tsu04g00134 962 Gene3D Ribonuclease Inhibitor 77 216 IPR032675 -
Tsu04g00134 962 ProSitePatterns Tyrosine protein kinases specific active-site signature. 786 798 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00134 Tsu-Chr4 1220950 1253318 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00134 28 834 Receptor kinase-like Gene Family AT4G08850 38.174 7.69e-167 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g00134 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00134 - - mtr:MTR_8g047230 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00134 04 1220950 1253318 Tsu04g00134 04 1220950 1253318 ECH