Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00127 ATGGGTTATCTTAGAAAAGTTTCCAAAACcttaaaacaatcaaattatGTTTCATTAttgttcaatttcaatttcactcCATTATCAAACAGAATAAGAACCCATCAAAGATTTTCCTTAACACGTGCACTTTTTTGTACCCAATCACGACAAAATAGTACCAAAGAGAAACCCATTATAGATTTGAGTCAGTATCCACCAGAGCTTGTGAGAAATTTCTCAATCATTGCACATGTTGATCATGGAAAATCTACTCTTGCTGATAGGCTTCTTGAACTCACTGGAACCATTAAGAAAGGAATTGGCCAGCCTCAGTATCTTGATAAATTGCagGTGGAGAGGGAGAGGGGAATCACTGTTAAAGCTCAGACAGCAACAATGTTTTATAAGAACATCATAAATGGCGATGATTCTCGTGATGGAAAGGAGTCACCTAATTATTTGTTGAATCTTATCGACACGCCTGGGCATGTAGATTTCAGTTATGAAGTGTCAAGGTCACTAGCTGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTTCAAGCACAAACCGTTGCTAACTTTTACCTTGCCTTTGAATCTAACTTATCAATTATACCTGTCATAAACAAGATAGATCAGCCAACTGCTGATCCTGACCGTGTTAAAGCTCAATTGAAATCAATGTTTGATCTTGACGCAAGTGATGTATTGCTAACATCGGCGAAAACTGGGAAGGGTCTTGAACATGTTCTTCCAGCAGTCATAGAGCGGATACCTCCGCCTCCTGGGAAGAGTGACTCTTCTTTACGTATGCTTTTACTTGATTCATATTTTGACGAATACAGAGGGGTGATATGCCATGTTGCTGTCGTTGACGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCAGCGGCGACTGGTAAATCATATGAAGCTTTGGATATAGGCATCATGCATCCTGAACTTACGCCTACTGGAATCTTGTTTACTGGACAAGTTGGTTATGTTATAAGTGGCATGCGGTCAACCAAAGAGGCACGCATTGGAGATACAATTTACCATACACGAAGCACTGTGGATGTGGTACCTCTTCCAGGCTTCAAACCCGCGAAACATATGGTTTTTTCCGGTCTTTTTCCAGCTGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAAGCTTACATGCAATGATGCCAGTGTCTCTGTCGCTAAAGAAACTAGCACTGCTCTAGGTCTAGGGTTCAGGTGTGGATTTTTAGGCCTTCTTCACATGGATGTTTTTCATCAAAGGCTTGAACAGGAATATGGAGCTCATATCATCTCAACCGTTCCTACTGTGCCTTATATATATGAGTATTCTGATGGAAGCAAATTAGAAGTTCAAAATCCTGCTGCATTACCGTCTAATCCCAAGCAACGAGTGGTAGCCTGTTGGGAACCTACAGTAATAGCTACTATAGTTATGCCTAGTGAGTATGTTGGATCTGTTATCACCCTTCTCTCTGAGCGTAGGGGTGAACAGTTGGAGTACTCGTTCATTGACAGTCAACGAGTTTTCATGAAGTATCGTCTTCCTTTGAGGGAAGTTGTTATTGACTTCTATAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTACGAGGATTCAGATTATCAACAATCTGATCTGGTGAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCCATGTCAACCATTGTTCATAACTCGAAATCATATCGTGTTGGGCGTGAATTGGTGGACAAATTGAAGAAAGTCATTGACAGGCAAATGTTCGAGATATCCATACAAGCCGCTATTGGGTCAAAAGTTATAGCAAGGGAGACTATTACGGCTATGAGAAAGAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTTCACGAAAGAGGAAGCTATTGGAAAAGCAAAAGGAAGGGAAAAAGCGAATGAAACGTGTTGGTTCTGTTGATGTACCCCAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2028 0.4024 MGYLRKVSKTLKQSNYVSLLFNFNFTPLSNRIRTHQRFSLTRALFCTQSRQNSTKEKPIIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGIGQPQYLDKLQVERERGITVKAQTATMFYKNIINGDDSRDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKAQLKSMFDLDASDVLLTSAKTGKGLEHVLPAVIERIPPPPGKSDSSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEALDIGIMHPELTPTGILFTGQVGYVISGMRSTKEARIGDTIYHTRSTVDVVPLPGFKPAKHMVFSGLFPADGSDFEALNHAIEKLTCNDASVSVAKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYSDGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVMPSEYVGSVITLLSERRGEQLEYSFIDSQRVFMKYRLPLREVVIDFYNELKSITSGYASFDYEDSDYQQSDLVKLDILLNGQPVDAMSTIVHNSKSYRVGRELVDKLKKVIDRQMFEISIQAAIGSKVIARETITAMRKNVLAKCYGGDVSRKRKLLEKQKEGKKRMKRVGSVDVPQEAFHELLKVS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00127 675 CDD LepA 71 259 - -
Tsu04g00127 675 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 68 260 IPR000795 GO:0003924|GO:0005525
Tsu04g00127 675 SUPERFAMILY EF-G C-terminal domain-like 479 573 IPR035647 -
Tsu04g00127 675 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
Tsu04g00127 675 SUPERFAMILY Translation proteins 258 355 IPR009000 -
Tsu04g00127 675 Gene3D Elongation Factor G (Translational Gtpase), domain 3 363 444 - -
Tsu04g00127 675 CDD EF4_II 267 352 - -
Tsu04g00127 675 Pfam Elongation factor G C-terminus 480 565 IPR000640 -
Tsu04g00127 675 TIGRFAM lepA: elongation factor 4 70 674 IPR006297 GO:0005525
Tsu04g00127 675 PRINTS GTP-binding elongation factor signature 72 85 IPR000795 GO:0003924|GO:0005525
Tsu04g00127 675 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Tsu04g00127 675 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Tsu04g00127 675 PRINTS GTP-binding elongation factor signature 115 123 IPR000795 GO:0003924|GO:0005525
Tsu04g00127 675 TIGRFAM small_GTP: small GTP-binding protein domain 74 248 IPR005225 GO:0005525
Tsu04g00127 675 Hamap Elongation factor 4 [lepA]. 66 675 IPR006297 GO:0005525
Tsu04g00127 675 Gene3D - 445 558 - -
Tsu04g00127 675 SUPERFAMILY EF-G C-terminal domain-like 371 448 IPR035647 -
Tsu04g00127 675 Gene3D - 559 633 IPR038363 -
Tsu04g00127 675 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 56 673 - -
Tsu04g00127 675 Gene3D Translation factors 262 359 - -
Tsu04g00127 675 Gene3D - 68 261 IPR027417 -
Tsu04g00127 675 CDD EF4_III 370 445 - -
Tsu04g00127 675 CDD lepA_C 480 559 IPR035654 -
Tsu04g00127 675 Pfam GTP-binding protein LepA C-terminus 567 673 IPR013842 -
Tsu04g00127 675 Pfam Elongation factor Tu GTP binding domain 70 257 IPR000795 GO:0003924|GO:0005525
Tsu04g00127 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 281 IPR027417 -
Tsu04g00127 675 PANTHER TRANSLATION FACTOR GUF1-RELATED 56 673 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00127 Tsu-Chr4 1152843 1159058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00127 70 211 Eukaryotic Initiation Factors Gene Family AT1G56070 41.497 7.74e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00127 K21594 - gmx:100781092 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00127 04 1152843 1159058 Tsu04g00127 04 1152843 1159058 ECH