Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00126 ATGTCAAAAATGTCTAGTCCAAGTAGTTCAGAGATTGAAGAGAAGAGAGTTACTTCAATTTTCAATGAAGCTGATTCCTCTACTCAACAAGAGGTTACAAAGGAAGACAAATTAAAAGATGCAAAATCCGAAATGGGCGAGGTGAAAGAAGAAAACGAAAGATTGAAGATGATGCTATCGCGAGTTGAAAAGGACTACAACTCGCTTCAACTCCGTTTCTTCGACATTGTTAACAAAGAAGTTTCTAATAAAGGAGTCGAAGAAATATCGACTTCACATGACGAAATTGATGAAGAACCCGAGCTTGTATCACTTTGCCTTGGGAGAAGTCCAAATGAGCACAAGAAAGAAGCAAAAATTGATCAAAACTCAAACAAAcctaaagaaaaagaagacatGGAAGTTAACCTTAGTCTCGGATTAGATTCCAAATATATGTTGTCTATGGAGGTAGTATCTGATTTGAGTCCAATGAATAGCTCAGAAGAATTACCAaaggaagttgaagaaaaaggaaCATTATTGTCATCATcaacaaataaatcaacaaaagtgattaatgttgatgatgatatttCAGATCAAATGCCAGCTAAGAGAGTTAGAGTATCTGTGAGAGCTAAATGTGATACTCCCACGATGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACAGTTGCACCAGCATGCCCAGTTAGAAAACAGGTACAAAGATGTGCTGATGACTTGTCCATATTAATCACAACATATGAAGGAACACACAACCATCCTCTTCAAGTTACAGCATCAGCTATGGCATACACAACTTCAGCTGCAGCTTCAATGATGTTATCAGgctcatcaacatcatcatcatcacatcaaaatattcaacatcaaaatattcatcATCAAAATTCCACATCTTTTGGAAATTCTCCAACACTACTCAATGGCCTAAATTTCAACAATAATCACTTTGAACAATCAAGAACACCAAAACAACATTTCTTCATTCCACAAAACCATAATAATTTGTTCCCAACAATCACTCTTGACCTAACTTCTCCTTCATccatatcatcaacatcatcaaacatAGCTTCAATTCCAAGATTTGCTCCAAATAATCTCAGTTTTTGTTCCACACAACCACCAAATTTCACACCAACATCAACCATTTggaacaacaacaaattagggttagggttcATTAACAATAACACATTACCTATTGAAAAACCACAAATTAGGCCTTTTAACCATTTCCAAGAAAATTTCTATCAAAATTGTGTGACAAATTATCAAACACCTTCAAGGCAAGCATTGGCGGAAACAATTAGCAAAGCAATAAGCACTGATCCTAGTCTTCATTCAGTTATTGCTGCCGCAGTTACATCGATTGTAGGACAAGGATCAAACAATGGTGGAAATCAAGAAGAGTTAAGAGATAATGGTTTAGGTTCAGGACTGAATTTGAAACTTGGTGAGTATCCTCAAATGGTTTCAAACAATTTGTTGAACCAAAATGGAAAAGGATGTTTGAAGGGTTCATATTTCAAAAGGTTGTCACCAACAAGTTCACAACCCAAAAATTTCATGCTTCTTCAACCATCATTGCCAAATTCTCTTTCTAAGAGTAACACAACTAGACCTTCATCCATTGTTAATCATATCAACCATTGTGATCCAAATATGAAGACACATCAttag 1740 0.3236 MSKMSSPSSSEIEEKRVTSIFNEADSSTQQEVTKEDKLKDAKSEMGEVKEENERLKMMLSRVEKDYNSLQLRFFDIVNKEVSNKGVEEISTSHDEIDEEPELVSLCLGRSPNEHKKEAKIDQNSNKPKEKEDMEVNLSLGLDSKYMLSMEVVSDLSPMNSSEELPKEVEEKGTLLSSSTNKSTKVINVDDDISDQMPAKRVRVSVRAKCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCADDLSILITTYEGTHNHPLQVTASAMAYTTSAAASMMLSGSSTSSSSHQNIQHQNIHHQNSTSFGNSPTLLNGLNFNNNHFEQSRTPKQHFFIPQNHNNLFPTITLDLTSPSSISSTSSNIASIPRFAPNNLSFCSTQPPNFTPTSTIWNNNKLGLGFINNNTLPIEKPQIRPFNHFQENFYQNCVTNYQTPSRQALAETISKAISTDPSLHSVIAAAVTSIVGQGSNNGGNQEELRDNGLGSGLNLKLGEYPQMVSNNLLNQNGKGCLKGSYFKRLSPTSSQPKNFMLLQPSLPNSLSKSNTTRPSSIVNHINHCDPNMKTHH 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00126 579 Coils Coil 31 72 - -
Tsu04g00126 579 MobiDBLite consensus disorder prediction 110 132 - -
Tsu04g00126 579 MobiDBLite consensus disorder prediction 1 52 - -
Tsu04g00126 579 SMART WRKY_cls 214 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00126 579 MobiDBLite consensus disorder prediction 551 579 - -
Tsu04g00126 579 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 35 562 - -
Tsu04g00126 579 Pfam WRKY DNA -binding domain 215 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00126 579 MobiDBLite consensus disorder prediction 1 28 - -
Tsu04g00126 579 MobiDBLite consensus disorder prediction 29 52 - -
Tsu04g00126 579 MobiDBLite consensus disorder prediction 109 132 - -
Tsu04g00126 579 SUPERFAMILY WRKY DNA-binding domain 208 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00126 579 Gene3D WRKY domain 199 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00126 579 MobiDBLite consensus disorder prediction 551 570 - -
Tsu04g00126 579 ProSiteProfiles WRKY domain profile. 209 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00126 579 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 562 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00126 Tsu-Chr4 1148674 1151414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00126 45 479 WRKY Transcription Factor Family AT5G15130 44.565 2.03e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g00126 WRKY 5.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00126 - - mtr:MTR_7g009730 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00126 04 1148674 1151414 Tsu04g03668 04 45714870 45719808 ECH
Tsu04g00126 04 1148674 1151414 Tsu04g00126 04 1148674 1151414 ECH