Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00108 atGGCAATGTTAATAGAAAATGAAGTCATGTGTTTGAGAAAGAGTCAAAGATCTATGGAAGAAAAAGAGGTAAAAGGAACACGTTGtgttaagagaaaaagaagagaacatGTTATTGGAACAATcatagatgatgatgataatcaCAATAAGAAGATGATAAAGCAACATGTTGGTGAAAATTCTACAACCAACACAACAAAGAGAAGCTCAAGATTTCGTGGTGTTAGCAGACATAGATGGACAGGTCGATTTGAAGCTCACTTGTGGGACAAGCTTTCTTGGAACATaacacaaaagaagaaagggAAGCAAgAATTTATTTGTGTTTCAAATATTGTAGGGgcttatgatgaagaagaatcagCTGCAAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACTAATTTTCAGATATCAGATTATGAGAAAGAGATAGAAATAATGAAAACCATGACCAAAGAGGAGTACTTGGCCACATTAAGAAgaAAGAGCAGTGGCTTTTCAAGAGGTGTCTCAAAGTATAGAGGTGTTGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGGATAGGGAGAGTTTTTGGAAACAAATATCTTTATCTTGGAACCTATAGTACACAGGAGGAAGCTGCACGTGCTTATGACATAGCTGCAATTGAATATAGAGGAATTCATGCTGTAACCAACTTTGAGTTAAGCAGTTACATAAAATGGTTAAAGCCAGAAAGtgacaaagaagaaaaacatgaaTCACAAGCACTACCAATAGAGTCGCAAACAATGGAATCTCCAAATAACTCTACTCTATTACAAGAGTCAAAGTTATTAACCCTTCAAAAGAGCTTTTTCATTCCAAATTACATTAATTCCAATGAAAAGCaagaatcttcatcttcatttgaaaataaaaactatcaTTTCTTGAGCAACAAGTCAAGTTCTCCAACCGCACTTAGTCTTCTCCTTCGCTCTTCGTTATTTAGAGAATTACTTGAAAAGAATTCAAATGTATCCGAGGATGAAGTCACGAGTGAGCAACatcaagatcaacaacaacaaatagcTAGTGATGATGAACTAGGAGGAACCTTCTATGATGATATTGGCAATATCTCATTTGACTTTGATCCCAATATGTTGCAAGAAAGAGACTTGCATTCAATATTTTGTACATAA 1197 0.3108 MAMLIENEVMCLRKSQRSMEEKEVKGTRCVKRKRREHVIGTIIDDDDNHNKKMIKQHVGENSTTNTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQEFICVSNIVGAYDEEESAARAYDLAALKYWGTSTFTNFQISDYEKEIEIMKTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFELSSYIKWLKPESDKEEKHESQALPIESQTMESPNNSTLLQESKLLTLQKSFFIPNYINSNEKQESSSSFENKNYHFLSNKSSSPTALSLLLRSSLFRELLEKNSNVSEDEVTSEQHQDQQQQIASDDELGGTFYDDIGNISFDFDPNMLQERDLHSIFCT 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00108 398 SMART rav1_2 72 150 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 SMART rav1_2 180 244 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 CDD AP2 179 240 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 SUPERFAMILY DNA-binding domain 71 145 IPR016177 GO:0003677
Tsu04g00108 398 PRINTS Ethylene responsive element binding protein signature 220 240 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 ProSiteProfiles AP2/ERF domain profile. 72 144 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 Gene3D AP2/ERF domain 179 240 IPR036955 GO:0003700|GO:0006355
Tsu04g00108 398 Gene3D AP2/ERF domain 71 146 IPR036955 GO:0003700|GO:0006355
Tsu04g00108 398 ProSiteProfiles AP2/ERF domain profile. 180 238 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 SUPERFAMILY DNA-binding domain 179 239 IPR016177 GO:0003677
Tsu04g00108 398 Pfam AP2 domain 179 230 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 Pfam AP2 domain 71 136 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 377 - -
Tsu04g00108 398 CDD AP2 71 146 IPR001471 GO:0003700|GO:0006355
Tsu04g00108 398 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 22 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00108 Tsu-Chr4 1031615 1034150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00108 68 242 AP2-EREBP Transcription Factor Family AT5G57390 65.714 1.62e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu04g00108 AP2 1.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00108 - - gmx:100792612 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00108 04 1031615 1034150 Tsu04g00108 04 1031615 1034150 ECH