Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00106 ATGGCTGGATTTGGAAGTAagattgcatttattttctTGGTTTTTGCCATTACTATTCCATGTCTTGAGGCTGGTATAGCTGAGTTTGATGATTATCTTAAAGCACAAGCTGAATTAGCTCATGAAATTGCTCTTAAGTCCTATGTGCCTAATCCTGAAAATATTACAACTGAAATCAATATACATGTTCACATGGCAATGCAAGAGGCAAATAAAGAGGTGTCTTTAAATAGCACAAGGAGGGAACTAAAAGAAGGTAAAAAATGCTTCGCCACCAATCCAATTGACCGTTGTTGGAGGTGTAGAAATGATTGGGCCCAAAACCGTCAAATGTTAGCCAAATGTGGAAAAGGTTTTGGTAGAAAGGCCGTAGGAGGACTTGGTGGTAAGTACTATGTTGTCACCGATCCATCCGACAATGATATGGTGAACCCAAAACCTGGCACTCTCCGATATGGTGCCGTTCAAAAGGGACCACTTTGGATCATTTTTGCACGTAGCATGACCATTGTATTACAACAAGAATTGTTAGTTTCATCTGACAAGACCATCGACGGTCGTGGAGCCAATGTGCAAATTAAGGACGGTGCTGGTATTACTATGCAGTTTGTGAGCAATGTCATCATTCACGGTCTTCGCATAAGGAACGTTAAGACTAAGAATGGTGGTATGATTAGAGATTCTTTTGATCATGTTGGACTTAGAACAAGGAGCGATGGCGATGCTGTCTCCGTCTTTGGTTCATCAAACATCTGGATTGATCATCTTTCCTTATCTAATTGTGATGACGGTCTTGTTGATGTTGTTTATGGCTCTACTGCAATCACAATATCAAATTGCCACTTGACCAAACATAATGATgtGATGTTATTTGGATCTAGTGATACATTTCAAGATGACAAGATTATGCAAATTACAGTTGCATTCAACCATTTTGGACAAGGATTAATCCAAAGAATGCCAAGGTGTAGATATGGATTTGTCCATGTTTTAAACAATGATTACACACATTGGATTATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAACCGTTTCATTGCTCCTGACAACAATGCTGCAAAAATAGTTACACATAGAGATTATGCATCAGAAGATGTTTGGTCAAAATGGCAATGGACATCACAAGATGATTATTTCATGAATGGTGCAACATTTATTCAATCTGGTTCTCCTATTAAGGATCTTCCATTCAAAAAAGGATATTTGATGAAACCAAGACATGGTAGAGAAGCTAATAGACTTACAAAGTATGCTGGGGCACTCAAATGCATTGTGGGTAAACCTTGCTAG 1329 0.3822 MAGFGSKIAFIFLVFAITIPCLEAGIAEFDDYLKAQAELAHEIALKSYVPNPENITTEINIHVHMAMQEANKEVSLNSTRRELKEGKKCFATNPIDRCWRCRNDWAQNRQMLAKCGKGFGRKAVGGLGGKYYVVTDPSDNDMVNPKPGTLRYGAVQKGPLWIIFARSMTIVLQQELLVSSDKTIDGRGANVQIKDGAGITMQFVSNVIIHGLRIRNVKTKNGGMIRDSFDHVGLRTRSDGDAVSVFGSSNIWIDHLSLSNCDDGLVDVVYGSTAITISNCHLTKHNDVMLFGSSDTFQDDKIMQITVAFNHFGQGLIQRMPRCRYGFVHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNNAAKIVTHRDYASEDVWSKWQWTSQDDYFMNGATFIQSGSPIKDLPFKKGYLMKPRHGREANRLTKYAGALKCIVGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00106 442 Pfam Pectate lyase, N terminus 26 83 IPR007524 GO:0030570
Tsu04g00106 442 Pfam Pectate lyase 175 358 IPR002022 -
Tsu04g00106 442 SUPERFAMILY Pectin lyase-like 93 433 IPR011050 -
Tsu04g00106 442 Gene3D - 92 435 IPR012334 -
Tsu04g00106 442 SMART amb_all 167 364 IPR002022 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 413 436 IPR018082 -
Tsu04g00106 442 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Tsu04g00106 442 PANTHER PECTATE LYASE 18-RELATED 6 442 IPR045032 GO:0030570
Tsu04g00106 442 PANTHER PECTATE LYASE 6 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00106 Tsu-Chr4 1026414 1028550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00106 6 442 Polysaccharide Lyase AT5G15110 53.079 2.65e-179 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00106 K01728 - gmx:100780236 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00106 04 1026414 1028550 Tsu04g03665 04 45677609 45684973 ECH
Tsu04g00106 04 1026414 1028550 Tsu04g00106 04 1026414 1028550 ECH
Tsu04g00106 04 1026414 1028550 Tsu06g02039 06 25235735 25238559 ECH