Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00103 ATGGGGTTTAGGAATAATGCAATTCAAGCAGGGAGTTTAGATGTGGGGGGGAAGTCAAAGGGAAAAGGAAAGATGAAGAAGGATGGTGATGAGAAGGAAATTGGATGTTGTGTTAAATTTAGTTGCTTTGGAAAGTGTATACCTTCAAGATTAAAGGTTGATAATTCTAAAAGTGGCACCACAAGTGCTCATAAggtggaAAACCCATCTGTTAATGAGAAAagcaaaaaggaaaaaattgctCCACCAGGATCGTCTACAACTAGTAATGGGGAAAGTGTCCCTTCCACTCCAAAGTTCAGTGAGGAATTGAAGGTTTCTTCTCATTTGAGAAAATTCACATTCAATGAGCTAAAGATGGCAACTCGGAATTTTCGACCTGAGAGTCTTCTTGGTGAGGGAGGCTTCGGTTGTGTTTTCAAAGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGACTTACCGTCGCGGTCAAGACCCTCAACCATGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAGACATTCTCGGTGATATTGTCCACCCGAATCTAGTTAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATCAGTTTATGCCGCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCCTTGCCTCTTCCTTGGTCGATCAGAATGAAAATCGCGCTTGGTGCAGCAAAAGGTCTTAATTTTCTCCACGAAGAAGCTCAAAGGCCAATAATCTATCGTGATTTCAAGACATCTAATATTCTATTAGACGCGgaatACAATGCAAAACTCTCGGATTTTGGACTTGCCAAAGATGGTCCTCAAGGAGAAAATACACACATATCAACACGAGTTATGGGAACATATGGTTATGCAGCTCCTGAGTATGTCATGACTGGTCATTTAACATCAAAAAGCGACGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGACGAGCTGTTGATAAGAATAGACCAAACGGGGAACACAATCTTGTGGAGTGGGCGAGACCTGTACTTGGAGAACGGAGATTGTTATTCCAAATAATCGATCCTCGTCTTGAAGGTCACTTCTCGGTCAAAGGAGCACAGAAAGCCGCCCAACTAGCCGCTCAATGCCTCAGCCGTGATCCAAAAGTCAGGCCTATGATGAGTGAAGTTGTTCAAGCTCTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATCACGTCATATCACTTTCAGGTAGTGCGCGTAGATCGTACCATGTCCATGCCGAATTCAAAAAATGGTACACAAACACAATTAGCATCTTTGTCGAAGAAGGGTCAACCTATGAGGATATTGTCGAGTCCAAATGGTCAACACGGTTCTCCTTATCACCATTATATCAAGTCACCAAAACCTAAACATGGATAA 1443 0.4193 MGFRNNAIQAGSLDVGGKSKGKGKMKKDGDEKEIGCCVKFSCFGKCIPSRLKVDNSKSGTTSAHKVENPSVNEKSKKEKIAPPGSSTTSNGESVPSTPKFSEELKVSSHLRKFTFNELKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDIVHPNLVKLIGFCIEDDQRLLVYQFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLNFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPQGENTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAVDKNRPNGEHNLVEWARPVLGERRLLFQIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKVRPMMSEVVQALKPLQNLKDMAITSYHFQVVRVDRTMSMPNSKNGTQTQLASLSKKGQPMRILSSPNGQHGSPYHHYIKSPKPKHG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00103 480 Pfam Protein kinase domain 128 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00103 480 ProSiteProfiles Protein kinase domain profile. 125 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00103 480 ProSitePatterns Protein kinases ATP-binding region signature. 131 163 IPR017441 GO:0005524
Tsu04g00103 480 SUPERFAMILY Protein kinase-like (PK-like) 99 406 IPR011009 -
Tsu04g00103 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Tsu04g00103 480 PANTHER RECEPTOR-LIKE KINASE PLANT 63 471 - -
Tsu04g00103 480 PANTHER OS01G0588500 PROTEIN-RELATED 63 471 - -
Tsu04g00103 480 MobiDBLite consensus disorder prediction 81 100 - -
Tsu04g00103 480 Gene3D Phosphorylase Kinase; domain 1 105 210 - -
Tsu04g00103 480 MobiDBLite consensus disorder prediction 432 480 - -
Tsu04g00103 480 MobiDBLite consensus disorder prediction 432 465 - -
Tsu04g00103 480 MobiDBLite consensus disorder prediction 54 100 - -
Tsu04g00103 480 Gene3D Transferase(Phosphotransferase) domain 1 211 428 - -
Tsu04g00103 480 CDD STKc_IRAK 131 409 - -
Tsu04g00103 480 MobiDBLite consensus disorder prediction 1 29 - -
Tsu04g00103 480 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00103 Tsu-Chr4 1002767 1006247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00103 89 422 Glycoside Hydrolase AT3G07070 51.156 1.49e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g00103 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00103 - - aprc:113861691 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02034 06 25167984 25171645 Tsu04g00103 04 1002767 1006247 PCT