Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00093 atggCAATAGATAgtgcttcttcttcatcatcttcttgttgGTCTCATTTCTGGTCATCGGCGCTCCGATCTAAGCGCTTAGTTTCTCCGGCGGAGAAAGCAGCTCGTGACAGTTCCGGCCGTGGTCTTTCCCGTCGACTAGGTGTCTTCGACCTTATTCTTCTCGGAATCGGAGCTTCTATCGGTGCTGGTATCTTCGTCGTCACCGGCACCGTCGCTCGTGACGCCGGACCTGGGGTAACAATAAGTTTTATACTTGCTGGAGCATCATGTGTTATAAATGCACTATGTTATGCGGAGCTAGCTTCTCGATTTCCGGCTGTAGTAGGAGGAGCATACCTATATACATATACGGCTTTTAATGAACTTACtgcttttcttgttttttcaCAATTAATGCTTGACTATCATATTGGGGCAGCTAGCATAGCAAGAAGTTTAGCAAATTACATTGTTTCATTTCTAGGGATCTTCCCTGTGTTCAAAGATAATATTCCAGCATGGATTGGACACGGTCAAGACATTGGAGGCGTGTTGTCCATCAATATCTTAGCTCCGATTCTCCTAATGCTTCTCACTTTAGTTCTTTGTCTTGGTGTTAAAGAATCATCagttgtgaatttttttatgacagTGACCAAGGTAatcattgttattattgttatttgtgCTGGAGCTTTTGAGGTTGATGTTTCCAACTGGTCTCCCTTTGTTCCAAATGGTATGAGAAGCGTCTTCACAGGAGCCACCGTAGTCTTCTTTGCGTACGTTGGGTTTGATGCAGTTGCCAATTCTGCTGAAGAATCTAAGAAGCCACAGCGGGATTTGCCAATAGGCataattggaagtctcttggtATGTATTGCATTGTACATTGGAGTATGCTTAGTGATTACTGGAATGGTTCCATACAATCTTCTAGGAGAAGATGCTCCTTTGGCTGATGCTTTTAAATCTAAGGGTCTAAAACCTGTTGCTGTTCTGATTAGCATTGGTGCTATTGCTGGACTTACAACAGCACTCCTTGTTGGTCTGTACGTTCAGTCTCGGCTATATCTTGGACTTGGCAGGGATGGTTTGCTACCCTCAATATTTGCTAAAGTTCACCCCAAACGCCACACCCCTCTTCATTCTCAGATTTGGGTTGGCTGTGTTGCCAGTATTTTGGCTGGGTTGCTTAATGTGAAAATGCTATCGCACATTCTTTCCGTTGGTACGCTGACTGGCTATTCAGTTGTCTCGGCATGCGTTGTTGTACTTCGCTGGAAGGATAGGACAAATAGCCAAGTATCATCTTCGGCTAAGCGGCGGGAGGGTATACTTTTCCTCATTACTGTTGCTGCTTCTGGATTTGCTGCGGGACTCCTTTTCCATTATCGAGTTTCATTTATCTTTGTCATTGTGGCTATAGTTGTTGCACTTGGTGCTTCTCTTGCTCTTCATTTCCGCCAGGTTTATGGAAAGTCAGTAGGGTTTTCTTGCCCAGGAGTTCCTATTGTGCCGTGCATTTGCATTTTCTTTAACATGTTCTTATTTGGCCAGTTACATCATGAAGCATGGGTGAGATTTGTGATTCTAAGCGTTGTTATGATTGGTGTTTATGCCATATATGGCCAGTATCATGCCGATCCAAGTGCAGATGAGAATATTGTTTATCACGAGGCTCCGGTGGAATCACCTCGATGA 1686 0.4158 MAIDSASSSSSSCWSHFWSSALRSKRLVSPAEKAARDSSGRGLSRRLGVFDLILLGIGASIGAGIFVVTGTVARDAGPGVTISFILAGASCVINALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFSQLMLDYHIGAASIARSLANYIVSFLGIFPVFKDNIPAWIGHGQDIGGVLSINILAPILLMLLTLVLCLGVKESSVVNFFMTVTKVIIVIIVICAGAFEVDVSNWSPFVPNGMRSVFTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGIIGSLLVCIALYIGVCLVITGMVPYNLLGEDAPLADAFKSKGLKPVAVLISIGAIAGLTTALLVGLYVQSRLYLGLGRDGLLPSIFAKVHPKRHTPLHSQIWVGCVASILAGLLNVKMLSHILSVGTLTGYSVVSACVVVLRWKDRTNSQVSSSAKRREGILFLITVAASGFAAGLLFHYRVSFIFVIVAIVVALGASLALHFRQVYGKSVGFSCPGVPIVPCICIFFNMFLFGQLHHEAWVRFVILSVVMIGVYAIYGQYHADPSADENIVYHEAPVESPR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00093 561 Pfam C-terminus of AA_permease 492 541 IPR029485 -
Tsu04g00093 561 Pfam Amino acid permease 47 461 IPR002293 GO:0016020|GO:0022857|GO:0055085
Tsu04g00093 561 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 7 558 - -
Tsu04g00093 561 Gene3D Amino acid/polyamine transporter I 43 485 - -
Tsu04g00093 561 PANTHER CATIONIC AMINO ACID TRANSPORTER 9, CHLOROPLASTIC 7 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00093 Tsu-Chr4 886727 891983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00093 9 485 Organic Solute Cotransporters AT1G05940 70.686 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00093 K03294 - gmx:100804988 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01957 06 24134077 24136229 Tsu04g00093 04 886727 891983 PCT