Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00089 ATGGATCCCTTCAAAGGTCAAGGTGGCATTCAAATGCTTCTAACTGCTGAACAAGAAGCCCAACACATTGTTTCTAATGCAAGAAATTTAAGAACTCAAAGGTTGAAGCAAGCAAAAGACGAAGCTGAGAAGGAGGCAGCTCAATATAGATCTCAAATGGAAGAAGAATATCAAAAGTCACTTTCAGAGACAACTGGGAGCTCTGGATCAAATGTTAAAAGGCTTGACCAAGAGACAGATGCTAAGATTATAGACTTAAAGAAATCAGGTTCAAAGGTCTCAACAGAAGTTGTTGACATGCTACTCAAGTATattacaaatattaaaacataa 333 0.3634 MDPFKGQGGIQMLLTAEQEAQHIVSNARNLRTQRLKQAKDEAEKEAAQYRSQMEEEYQKSLSETTGSSGSNVKRLDQETDAKIIDLKKSGSKVSTEVVDMLLKYITNIKT 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00089 110 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 1 110 IPR005124 GO:0016471|GO:0046961|GO:1902600
Tsu04g00089 110 MobiDBLite consensus disorder prediction 35 81 - -
Tsu04g00089 110 Pfam Vacuolar (H+)-ATPase G subunit 7 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
Tsu04g00089 110 Coils Coil 32 59 - -
Tsu04g00089 110 MobiDBLite consensus disorder prediction 53 74 - -
Tsu04g00089 110 Gene3D - 3 110 - -
Tsu04g00089 110 PANTHER V-TYPE PROTON ATPASE SUBUNIT G3 1 110 - -
Tsu04g00089 110 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 8 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
Tsu04g00089 110 SUPERFAMILY F1F0 ATP synthase subunit B, membrane domain 11 58 IPR028987 -
Tsu04g00089 110 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00089 Tsu-Chr4 856552 858110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00089 1 109 Primary Pumps ATPases(2) AT3G01390 57.798 2.74e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00089 K02152 - gmx:100818549 178.718