Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00068 atgCGGATGAGTTGTAATGGTTGTAGAGTACTAAGAAAAGGTTGTAGTGAAAATTGTAGCATAAGACCTTGTTTGCAATGGATCAAAAACCCTGAATCACAAGCTAATGCCACCGTCTTTCTTGCTAAATTTTACGGTCGTGCCGGACTCATGAATCTTGTTAACGCCGGCCCTGAACATCTTCGTCCAGCGATTTTTCGTTCATTGTTGTATGAAGCATGTGGTCGAATAGTGAACCCAATTTACGGTTCAGTCGGTTTATTATGGTCTGGGAGCTGGCAGCTATGTCAAGCCGCGGTGGAAGCCGTTTTGAAAGGCGCGCCGATTACGCCGATTACTTCGGAAGCAGCTGCTAACGGGAGAGGCCCACCACTCAAAGCTTATGACATACGCCATGTGTCGAAAGACGAGAACTCGGCTGCATCGAACGAGTTAACCCAGCAGCGGGTCAAGACTCGTTCTCGAAAGCGGTCGAATTTAGCCAAGCCGAAAGAGAGAATCACTGATGAGGAAAAAAGTAGTAATGATAATAAGGGAATTGAATCCGGTTCAGTTGAACCGGTTGAAGAGGTGATGAACCGGTCAGCGAGTCATGAGTCGTCGATTAGCCACCAGTCTGAGGCGGTCAATGCGGCGGCTGTTGATGGAGAGAGTAAAGAAAGTGAGAGTGAAACTTCTATGGTTTTGTTTAGAGATGAACCGGAGAAAGAATCGAACCGGAATTTGAAGCGGTCGGACCGACCCAGTGAAAGTGGAGAGGAAAATGTTGGTTTGGAACTTACTCTTGGGCTTGAACCGGTTTCACGTGTTTATCACGTGGTTCCTGTGAAGAAAAGAAGGGTTGAATTGAAGGATTGTGGTGGTGGTTCGTGGAATGTGGAGCTAGGACTTCAATACTCGGCTTAG 906 0.4691 MRMSCNGCRVLRKGCSENCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKDENSAASNELTQQRVKTRSRKRSNLAKPKERITDEEKSSNDNKGIESGSVEPVEEVMNRSASHESSISHQSEAVNAAAVDGESKESESETSMVLFRDEPEKESNRNLKRSDRPSESGEENVGLELTLGLEPVSRVYHVVPVKKRRVELKDCGGGSWNVELGLQYSA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00068 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 296 - -
Tsu04g00068 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 296 - -
Tsu04g00068 301 MobiDBLite consensus disorder prediction 194 208 - -
Tsu04g00068 301 PIRSF AS2 1 299 IPR017414 -
Tsu04g00068 301 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tsu04g00068 301 MobiDBLite consensus disorder prediction 134 260 - -
Tsu04g00068 301 MobiDBLite consensus disorder prediction 161 177 - -
Tsu04g00068 301 MobiDBLite consensus disorder prediction 217 253 - -
Tsu04g00068 301 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00068 Tsu-Chr4 708042 709928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00068 1 281 AS2 family AT3G02550 59.717 5.77e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g00068 LOB 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00068 - - lja:Lj1g3v3317390.1 428.713