Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00066 ATGGCTATCACTTCCTCAACATTAATCGAAAAAAAGAAGGTTTTGTTCGTAATGGGTGCAACTGGAACTGGAAAAACTAAACTTTCCATCAACTTAGGTACTCAATTCCCCTCTGAAATCATCAACTCTGACAAAATTCAAGTCTATAAGGGTCTTGACATTGTCACCAACAAAATACCAAAATCCGAACGTGGTTTGATTCCACATCACCTGTTAGGCATCATTGATGATCCTGATTATGATTTCACTGTGAATGATTTTTGCAAGCATGTGTCTGAAGCTCTAGATCTCATAATTGAAAATGGACACCTACCTATTATTGTAGGAGGGTCAAATTCTTACCTACAAATATTACTTGATAATgcttttatttcaaaatatgaTTGTTGTTTCATTTGGACCGACGTGTCTTTGCctattttgtttcaatatttAGACAAAAGAGTTGATGAAATGGTTGAGGTAGGGTTGGTGGATGAGATTAGAGAATTTTTTGTGCCCGAAGCAAACTGTGAAGCGGGAATTAGAAGGGCGATTGGAGTTCCTGAactcaattattattttgaaatagaaaatgaaaaagatattGACGAGGCTCAAAAGGAAAATATACTAAAGGAAGCAAttcaaaaaaccaaacaaaacactTGCAAATTGGCTGAACAACAACTCTCCAAGATCCATAATATGGTTGATAATCTTGGATGGAagatgaacaaaattgattCTACAAAAGTGTTTGAGGCCCTTTTAGGGGGAGAAGATTATAAACCTTTGTATCAAGAGATTGTGATTAAGCCAAGCATTGAGATTGTGAAGAGATTTCTTGAGGAGACAACTCATGCATTTGGaaatacaaaatattcaaaTGGAAATGGAAAACAAACAACCAATTAA 897 0.3211 MAITSSTLIEKKKVLFVMGATGTGKTKLSINLGTQFPSEIINSDKIQVYKGLDIVTNKIPKSERGLIPHHLLGIIDDPDYDFTVNDFCKHVSEALDLIIENGHLPIIVGGSNSYLQILLDNAFISKYDCCFIWTDVSLPILFQYLDKRVDEMVEVGLVDEIREFFVPEANCEAGIRRAIGVPELNYYFEIENEKDIDEAQKENILKEAIQKTKQNTCKLAEQQLSKIHNMVDNLGWKMNKIDSTKVFEALLGGEDYKPLYQEIVIKPSIEIVKRFLEETTHAFGNTKYSNGNGKQTTN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00066 298 Gene3D - 11 276 IPR027417 -
Tsu04g00066 298 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 138 238 - -
Tsu04g00066 298 Pfam IPP transferase 126 225 - -
Tsu04g00066 298 Pfam IPP transferase 47 121 - -
Tsu04g00066 298 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 293 IPR039657 -
Tsu04g00066 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 201 IPR027417 -
Tsu04g00066 298 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00066 Tsu-Chr4 665494 666390 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00066 125 282 C2H2 Transcription Factor Family AT2G27760 29.508 1.67e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00066 K10760 - gmx:121173984 424.091