Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00048 ATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTCGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCCGGTTGTGGCAAAACTCACATAGTCGGTGCTGCTGCCGCTGCTTCTTCACTTCGATTCATATCAGTTAAAGGGCCAGCACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCTGCAGCCCCGTGCCTACtattttttgatgaatttgattctATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACCGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTGGATGCGGCACTGTTGAGACCGGGTAGGTTAGATCGCCTTCTATTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCAGTAGCTAATATGACCGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAACATCAATACATTTGGGTCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCCAAGACCAGACCATCTATTTCAGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTCCTGGATTCAAAGAGACCCGTTGCTGCCCAGTCAAGGGATGTAAAAGGCAAGAAGGCAACTCTAGCGTGA 948 0.4293 MHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPALLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAAVANMTEGFSGADLQALLSDAQLAAVHDILDNINTFGSEKTPVITDALLKLTASKTRPSISEEEKRRLYSIYHQFLDSKRPVAAQSRDVKGKKATLA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00048 315 Pfam AAA+ lid domain 214 251 IPR041569 -
Tsu04g00048 315 Gene3D - 193 294 - -
Tsu04g00048 315 PANTHER AAA-FAMILY ATPASE 1 293 - -
Tsu04g00048 315 ProSitePatterns AAA-protein family signature. 162 180 IPR003960 GO:0005524|GO:0016887
Tsu04g00048 315 PANTHER PEROXISOME BIOGENESIS FACTOR 1 1 293 IPR025653 GO:0005524|GO:0005778|GO:0006625|GO:0016887
Tsu04g00048 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 286 IPR027417 -
Tsu04g00048 315 SMART AAA_5 58 194 IPR003593 -
Tsu04g00048 315 CDD AAA 28 191 - -
Tsu04g00048 315 Pfam ATPase family associated with various cellular activities (AAA) 62 189 IPR003959 GO:0005524|GO:0016887
Tsu04g00048 315 Gene3D - 9 191 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00048 Tsu-Chr4 492866 497683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00048 56 250 Calmodulin-binding Proteins AT3G56690 38.776 3.89e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00048 K13338 - gmx:100803882 558.14