Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g00048 | ATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTCGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCCGGTTGTGGCAAAACTCACATAGTCGGTGCTGCTGCCGCTGCTTCTTCACTTCGATTCATATCAGTTAAAGGGCCAGCACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCTGCAGCCCCGTGCCTACtattttttgatgaatttgattctATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACCGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTGGATGCGGCACTGTTGAGACCGGGTAGGTTAGATCGCCTTCTATTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCAGTAGCTAATATGACCGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAACATCAATACATTTGGGTCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCCAAGACCAGACCATCTATTTCAGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTCCTGGATTCAAAGAGACCCGTTGCTGCCCAGTCAAGGGATGTAAAAGGCAAGAAGGCAACTCTAGCGTGA | 948 | 0.4293 | MHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPALLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAAVANMTEGFSGADLQALLSDAQLAAVHDILDNINTFGSEKTPVITDALLKLTASKTRPSISEEEKRRLYSIYHQFLDSKRPVAAQSRDVKGKKATLA | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g00048 | 315 | Pfam | AAA+ lid domain | 214 | 251 | IPR041569 | - | |
Tsu04g00048 | 315 | Gene3D | - | 193 | 294 | - | - | |
Tsu04g00048 | 315 | PANTHER | AAA-FAMILY ATPASE | 1 | 293 | - | - | |
Tsu04g00048 | 315 | ProSitePatterns | AAA-protein family signature. | 162 | 180 | IPR003960 | GO:0005524|GO:0016887 | |
Tsu04g00048 | 315 | PANTHER | PEROXISOME BIOGENESIS FACTOR 1 | 1 | 293 | IPR025653 | GO:0005524|GO:0005778|GO:0006625|GO:0016887 | |
Tsu04g00048 | 315 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 24 | 286 | IPR027417 | - | |
Tsu04g00048 | 315 | SMART | AAA_5 | 58 | 194 | IPR003593 | - | |
Tsu04g00048 | 315 | CDD | AAA | 28 | 191 | - | - | |
Tsu04g00048 | 315 | Pfam | ATPase family associated with various cellular activities (AAA) | 62 | 189 | IPR003959 | GO:0005524|GO:0016887 | |
Tsu04g00048 | 315 | Gene3D | - | 9 | 191 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g00048 | Tsu-Chr4 | 492866 | 497683 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g00048 | 56 | 250 | Calmodulin-binding Proteins | AT3G56690 | 38.776 | 3.89e-39 | 145 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g00048 | K13338 | - | gmx:100803882 | 558.14 |