Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00043 ATGGCTGAAATGCAATACTATATAcaactttttttagttttgttactCTCCACCATTGCAATTATTCGAGCCATACCtacaagaaaaaagaagaacaagaatCATCTTGCTCCACCAAGAACCCCTCTTGCCTTACCTATCATTGGACACTTTTACCTTTTTTCTAAGTTACCAGTTCACCAAAATTTTCACAACCTTTCAATTCAATATGGACCTATAATGAAACTTTTCCTAGGTTATGTCCCTTGTGTAGTAATTTCAAGTCCAGAAATAACAAAGGAGTTTCTTAAAACTCATGAAACTTCCTTCTCAAATCGCTTAATAAATCATGTAGTTCACTACTTATCATATGGTTCAAAAGATTTCATGTTTGCACCTTATGGTGACTATTGGAAATTCATGAAAAAGATATGCATGTCAGAGCTTCTTGGTGGAAGAATTCTTGATCAATTCCATCCCTTGAGACAACAAGAGACTTTGAGGTTACTTAGAGTTTTGCAGAAGAAAGGGAAAGCCGGCCTGGAGGCGGTTGATGTCGGTGCCGAGCTTTTGACACTAACCAATAGAATTATGACAAGGATGACAATAAGTAGAGCTTGTTGTGAAAATGATTGTGATGTTGAAGAGATTAGGAAGTTGGTTCAAGATTCTTCAGAACTTGCAGGGAAGTTTAATTTGTCtgattttatttggttttttaagAATTGGGATTTGCAGGGATTTAACAAAAGGCTAAAAGAGATGATGGAAAGGTTTGACACAATGATTGAGAGAGTGATAAGGGAGCATCAAGAGGATATGATGaagaaaaggaaggaaaatGTTGAAGGTGCTGCTCATGTTAAGGATATACTTGATATTTTGTTGGAAATTCAAGAGAATGAGATCTCTGAGATGAAGTTAACTAGAGAAAATGTCAAGGCTTTCATCtttGACATGTTTTTAGCAGGAACAGACACATCTTCTACAACTATTGATTGGGCTCTAGCTGAGTTAATAAACAACCCACATGTGATGGAGAAAGCAAGACAAGAGATTGATTCACTAACAAGAAAAAGTAGATTAATACAAGAATCCGATCTTTTGAATCTTCCATATCTTCGAGCTATACTCAAAGAAACACTAAGATTACACCCTACAATACCATTAATGGTTAGAGAATCATCTAAGAGTTGTAATGTTAGTGGTTTTGAGATACCAGCAAAGACTATTTTATATGTTAACTTTTGGTCAATGGGTAGGAACCCTAAACTGTGGGAGAATCCACTTGAGTTTAAACCTGAAAGGTTTATGAGTGAAGGGAATAAGTTTGACGTGAGGGGacaaaattttcaatatattcCATTTGGAACTGGAATAAGAATTTGCACTGGTATCTCATTAGCACTTCAAGTTGTTCCTACAAATCTTGCCGCGTTGATTCAGTGTTTTGAATGGAAGGTTGGTGGTAATGGAAAAGTTAACATGGAAGAGAAGCCTTCTACTGTCCTTAGAAGGGCTCATCCTTTGATGTGTGTCCCTATTCCTCGtttaaatttcttttcttttgatgaGTATACTATATGTGCATGTTAG 1575 0.3422 MAEMQYYIQLFLVLLLSTIAIIRAIPTRKKKNKNHLAPPRTPLALPIIGHFYLFSKLPVHQNFHNLSIQYGPIMKLFLGYVPCVVISSPEITKEFLKTHETSFSNRLINHVVHYLSYGSKDFMFAPYGDYWKFMKKICMSELLGGRILDQFHPLRQQETLRLLRVLQKKGKAGLEAVDVGAELLTLTNRIMTRMTISRACCENDCDVEEIRKLVQDSSELAGKFNLSDFIWFFKNWDLQGFNKRLKEMMERFDTMIERVIREHQEDMMKKRKENVEGAAHVKDILDILLEIQENEISEMKLTRENVKAFIFDMFLAGTDTSSTTIDWALAELINNPHVMEKARQEIDSLTRKSRLIQESDLLNLPYLRAILKETLRLHPTIPLMVRESSKSCNVSGFEIPAKTILYVNFWSMGRNPKLWENPLEFKPERFMSEGNKFDVRGQNFQYIPFGTGIRICTGISLALQVVPTNLAALIQCFEWKVGGNGKVNMEEKPSTVLRRAHPLMCVPIPRLNFFSFDEYTICAC 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00043 524 Coils Coil 242 262 - -
Tsu04g00043 524 Coils Coil 339 359 - -
Tsu04g00043 524 Pfam Cytochrome P450 39 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 Gene3D Cytochrome P450 23 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 515 - -
Tsu04g00043 524 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 3 515 - -
Tsu04g00043 524 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g00043 524 SUPERFAMILY Cytochrome P450 41 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00043 Tsu-Chr4 456358 458296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00043 1 516 Cytochrome P450 AT5G06900 46.332 8.37e-158 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00043 K24188 - gmx:100805931 655.21