Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00034 ATGGGTTCTGAGAATGTGTCCAAAGCAAGTAAACTCTTTCAAGCTCAAGCTCACTTGTATGATCACATCCTTAGCTTCTTGAAACCCATGTCCATCAAGTGGGCAGTTGAACTCAACATACCCGATATCATCCAAAATCACGGCCAACCCATTACGCTTCCTCAGCTTGTCGCCGCACTTCAAATTCCAGAACAAAAAACCGCTTGTGTTCGAAGCCTCATGCGTTTATTGACAcacaataacttttttataattgagATTGTGGACGAGAAAGAAGCGTATGATCTTTCTCCGGCATCAGAGCTCCTTGTTAAAGGCACTGATCATTGTTTAACTTCGATGGTTCGGTTGTTAACAAATCCAACTcttgttgatttatttaatcatttaagtAAATGGACTTCTGGAGAGAAACTCACAATTTATGATACTGCATTAGGCAAAGATGACTATTGGAGTTTTATTCATCAAAATCCATTACATTTGAAGTATTTCAATGATGCTATGGAAAGCGATTCTCGTGTTGTGAGGTTGGCACTAAGAGATTGCAAATCAGTTTTCGACGGTTTAGTTTCTCTAGTAGATGTTGGAGGCGGAACTGGAAACACAGCTAAAATTATTTGTGAAACATTTCCTATGTTAAAATGCATAGTATTAGACCTTCCACAAGTGGTAGCTGATTTACAAGGAAATGGCAATTTGAGTTTTATGGGTGGAAACATGTTCCATTCTATCCCTCAAACTGATGCAATTTTATTAAAGTGGATTTTGCATGATTGGAATGATGAAGACTGTGTTAAGATACTTAAAAATTGTAAAGAAGCTGTTTCAAGAAATGACAAAGGAggaaaaatcatcatcatagaTATTGTGATAAATGAAAAGCAAGATGAACATGAAATGACAGAAGTCAAGCTCTTCTTTGACATAGTTATGATGGCTAGTTTTAATGCAAAAGAAAGGGATGAACAAAACTGGAAGAAAATCTTCAATGAAGCAGGGTTCACACGTTACAAAATATTTCCTATATTTGGTTTTAGATCACTCattgaaatttatgtttaa 1065 0.3427 MGSENVSKASKLFQAQAHLYDHILSFLKPMSIKWAVELNIPDIIQNHGQPITLPQLVAALQIPEQKTACVRSLMRLLTHNNFFIIEIVDEKEAYDLSPASELLVKGTDHCLTSMVRLLTNPTLVDLFNHLSKWTSGEKLTIYDTALGKDDYWSFIHQNPLHLKYFNDAMESDSRVVRLALRDCKSVFDGLVSLVDVGGGTGNTAKIICETFPMLKCIVLDLPQVVADLQGNGNLSFMGGNMFHSIPQTDAILLKWILHDWNDEDCVKILKNCKEAVSRNDKGGKIIIIDIVINEKQDEHEMTEVKLFFDIVMMASFNAKERDEQNWKKIFNEAGFTRYKIFPIFGFRSLIEIYV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00034 354 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 4 353 - -
Tsu04g00034 354 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Tsu04g00034 354 Gene3D - 2 103 IPR036388 -
Tsu04g00034 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Tsu04g00034 354 Gene3D Vaccinia Virus protein VP39 104 353 IPR029063 -
Tsu04g00034 354 Pfam O-methyltransferase domain 127 335 IPR001077 GO:0008171
Tsu04g00034 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 352 IPR029063 -
Tsu04g00034 354 SUPERFAMILY "Winged helix" DNA-binding domain 10 107 IPR036390 -
Tsu04g00034 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Tsu04g00034 354 PANTHER O-METHYLTRANSFERASE 4 353 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00034 Tsu-Chr4 352507 353928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00034 29 340 Monolignol Biosynthesis Gene Families AT5G54160 31.269 1.08e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00034 K22588 - gmx:100813225 391.734