Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00029 ATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAGGCCAGTCGATGTCTGCAGAAATGGTTGCATGTATTGCTGTTGAGTCGTTGTCGATCTTGGACAAGATGCACTCAAGGGGATATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCGGGTACAGCACAAGAGAAGAAATTGTTTCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCACTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTCAGAGGAACTGTTCGGTATGCAAGTGTTCATGCTCATTTGGGAAGAACTGCTAGCAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATTTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGAGATAACAAGTCATATCTTGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTATGCTGCTTCTGCCCTACTCCTTTCAGGCATTTTCTTGAGTTTGTAGTGAACATGAAATTCGACGAAGAACCAAACTATTCCAAGCTAATATCCTTATTTGATAGTGTACTCGGACCAAATCCTGCACTGCGGCCAATTAATACTGAAGGTGCTCAAAAGGTGGGGCAAAAGAGAGGTAGATTGAAtattgaggaagaagatgattcaCAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATATCAATTTACAATGCAAGAATGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGGAAGATTAGCGCAACATGTAGAGCGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCAGGAACTGGTTTTACGAATCAAGTTTACAAATTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAATTATTACATTACTTCTATTGCTGGAGTTACTAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGCGAGTCTTTTCCCTTCAAATGGATCAACAAGAAGTGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCACGGAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCTAGCGAAGGAATCCATAGACGATGGGATAATGGTTACAGGATCACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGCAAACCACGGCGAAGGCCTGCTGACGAAACTCAGGAAACTCTTAGGACATCTCAATTTCCAAGCACACATGTTAAGgaaaaatggtcaaaaaaccTTTACCTTGCTTGTTTGTGCTATGGACGTACAGTATGCTGA 1446 0.4156 MVMDMLGPSLWDVWNSSGQSMSAEMVACIAVESLSILDKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSTGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSYLVCKKKMGTSPEMLCCFCPTPFRHFLEFVVNMKFDEEPNYSKLISLFDSVLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISIYNARMPMKQRYHYNVADGRLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00029 481 SMART serkin_6 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00029 481 Pfam Protein kinase domain 2 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00029 481 SUPERFAMILY Protein kinase-like (PK-like) 1 202 IPR011009 -
Tsu04g00029 481 PANTHER CASEIN KINASE-RELATED 1 455 - -
Tsu04g00029 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Tsu04g00029 481 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00029 481 Gene3D Transferase(Phosphotransferase) domain 1 1 239 - -
Tsu04g00029 481 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00029 Tsu-Chr4 306147 313096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00029 37 198 MAP Kinase Kinase Kinase AT5G50180 25.000 3.62e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Tsu04g00029 Pkinase 4.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00029 - - gmx:100819969 956.822