Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00028 ATGGCATCAACAACATGTTTTGTCACAAAGAATGAATTTCCTATGAAAGTGGTAGCTCCCATATCTCATTCATATCCAGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCTAAGCTCTTCATGGTTACATTAGAGAAGCTTCATGCTTCTATGGGTACCAAGTTCATGATTCCGATTATCGGAGGAAAGGAACTAGATTTGTGTCGACTCTTCGCTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTGACAGCAACTTTCAATTTTCCATCAACAGCAACAAATGCTTCCTTTGTGCTTAGAAAATATTATTCTTCATTGCTTTATCACTATGAACAAATATACTATTTTAGAGCCAATCGATGGACACCTGCATCTTCTGACTCTTTGCATAATCAATCAACTCCTGCTTCAATAGCACAATTTTTGCAGCCTTCTCCAACAACACAACCAATTGACTATCAAAGGTCAAGGGTTCATGCTTCTGAATTGCCTCAAGtgtctttttcaagatcttcactTGTTGGAGTTATTGATGGAAAGTTTGAAAATGGATATTTAGTTTCAGTTTCATTAGGTTCAGAGACACTCAAAGGTGTATTATATGAGTCTCCACAGTATATTatgattaataataacaataatattgcTTCTGCTGCATTGGGGGTCCAACGCCGCCGTCGCAGAAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTATAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTATGGAACAACTTAAAAGAATCTGAAAAAACAGTTTATCAAGAGAAAGCCATTAAGGATAAAGAGAGGTACCAAGCAGAAATGGAAGATTATCGCGAAAAATTGAAGACGAGCACTACGATCGACAACGCACTGTCGCTGCAACAACAATTTCCAGAAGCAAATTCAGCTTTGGTGGATGTTGACATGAAAATGCTTGATTCATTTCAAACTCCCGAGGAGAGTTTTTCTAGTGGAAGTGATTATGTTGTAGATGATGTCAACATGGATGCTTCCTCTAGTGGAGCAAAATTTGATTCTGAAGCTTTTATGAATTCAGATAAACCAACTAAGGAAGGAGTTATCGAACTTCTTAGCCATTGTGAAGTGAAAAAAGAGGATGCTAGAGAATTTCAACATACTCAAAAGATAAATGAGGGTCAAAACATGTTAACCTTACTTTAG 1311 0.3661 MASTTCFVTKNEFPMKVVAPISHSYPEPLAKYDDVVANPKLFMVTLEKLHASMGTKFMIPIIGGKELDLCRLFAEVTSRGGIEKLMKERRWKEVTATFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRANRWTPASSDSLHNQSTPASIAQFLQPSPTTQPIDYQRSRVHASELPQVSFSRSSLVGVIDGKFENGYLVSVSLGSETLKGVLYESPQYIMINNNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYREKLKTSTTIDNALSLQQQFPEANSALVDVDMKMLDSFQTPEESFSSGSDYVVDDVNMDASSSGAKFDSEAFMNSDKPTKEGVIELLSHCEVKKEDAREFQHTQKINEGQNMLTLL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00028 436 CDD HMGB-UBF_HMG-box 254 318 - -
Tsu04g00028 436 SMART bright_3 37 128 IPR001606 GO:0003677
Tsu04g00028 436 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Tsu04g00028 436 SMART ARID_2 33 123 - -
Tsu04g00028 436 MobiDBLite consensus disorder prediction 234 248 - -
Tsu04g00028 436 PRINTS High mobility group (HMG1/HMG2) protein signature 286 305 - -
Tsu04g00028 436 PRINTS High mobility group (HMG1/HMG2) protein signature 305 325 - -
Tsu04g00028 436 Pfam HMG (high mobility group) box 254 321 IPR009071 -
Tsu04g00028 436 SUPERFAMILY HMG-box 242 326 IPR036910 -
Tsu04g00028 436 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Tsu04g00028 436 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 380 - -
Tsu04g00028 436 Gene3D - 29 141 IPR036431 GO:0003677
Tsu04g00028 436 Gene3D High mobility group box domain 238 338 IPR036910 -
Tsu04g00028 436 SMART hmgende2 253 322 IPR009071 -
Tsu04g00028 436 MobiDBLite consensus disorder prediction 233 260 - -
Tsu04g00028 436 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 254 321 IPR009071 -
Tsu04g00028 436 Coils Coil 303 330 - -
Tsu04g00028 436 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 14 380 - -
Tsu04g00028 436 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Tsu04g00028 436 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00028 Tsu-Chr4 301707 305035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00028 1 354 ARID Transcription Factor Family AT1G04880 55.108 1.03e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu04g00028 ARID 5.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00028 - - mtr:MTR_7g005970 709.523