Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00026 ATGGCTTCATCTTTGGAGGACCTTCTTCGAGAAGAAGGATTCAAAGGAAGCAGTAAAAGAGTGCATCGGTCAAGATCTTCCTTCCACCATGGTGCTTCAAGTGATCCACTTCACTCTTTAGAAGAGAGACTCTGTGTATCATCAAGTGAAAGAATCAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGATATCAGATTAACAATACAAGAGACAATAAGAACACAAGATCAAAGGATAACAATAATGTTTTTATAGGAAACGAGATAAATCACGGACTGTTGAAAAACGATGAATCTGAGAAGAACAAATCTTATAATTCATCAGAGAGTGATAGTGGATTTGAAGATGTTTATTCAGATAAAGTATCTGATGCGAAAAGAGGCAAAGACAagtattttaaggaaaaaatggTTGAAAAGCCAATCAAGGATTCGTATATGCTTAGACAATTGAGTGGAAATAGAAAGAATGTAAAGCACCAAGAAAAATCGCAAACTATATCGAATAATAATAGCAAAAGCTTTGAAAATAGCAGGAACAAAACTAGCCATCAATTACAAGCTGATTCTAGTCTGGCTATTGATGAAATTGCTGTGAAAGCACTAGTTTCCATTCTGAATGGATACATAGAAAGTTTCCTAAAAGATGAAGATTTTCGATCTGCGTTGCGCCACAATTGTTTCTCCTCCTTGAATTTTATTCAACTTGAGGAGGAAGAAAACAATTCTGAGACCAAAGTGATTACAAGTCTTGAGCAAGCAATTGAGTGCATAGAAAAAACTGCTGCTGAGGAAGAACCTAAATCTGCAACAAATTTGAAAAGAGCAACAATGCAGCTTAGCATTATTGCAGGTTTGAGTTTGAATGATCTCAAGCATGATCTTACGTGCGGAATACCAAATTTCAAGTTATCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATatgatacaaataaaaaagaaagtttcGGCGAAGCATCTTTTGCAAGTCTTTTGTGATTCGCCTTTTCAGGCACGGACAATATTGTTGCCTGAACTTTGGGAGCGTCTATTTTATCCACAATTTGCTCATTTGAAGAAATGGTATAACAACAAGGAAGGTGAAATTGTTGTAGATACACCAAGCAGAAAACCAAGAAAGTTAAAGATTCTTCAAAAAGTGTATAATGAAAGTTTGGATTCAGGAACTCAAACTTTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTATTCCTTCTATTGGAATTCCATCATTTTCTGTTACGAGTCGACAGGGAAGTTCATTTGGTCATTCTTTTGAGTCTTCTAGCTCAAATGAACCATTCTCACCACAAGCAATGGTCAGCAAGAAGCTATATGATTCTTTCTTTGGTGGATATAGTAAACCTCAAGTCTATGTTGTTGATGAAGATAAGGATGAAGATAGTTATGAAAATTGTGAGAGAGGCTCTTATGGTTCAACTGTCgttaaaaaaacagtaatataTGAATCCGAAACTGTTAAATTTATTGATCAAAGTGATGAAGATTTCAATCCAAGTGTTCCAGTTCATGGATTCCATCCTAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATACTACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTCACATAGTTGATGATCTACCACATGAAAAAGGAAATGAAATTTCTCTCAGGAAGACGCAACCAAATATGATAAGCTCTACTCTTGAAGGATCATATTTTCCAAGCATACCACAGGAATTTATCTGTCCACTGACAAGAAAGGTCTTTGAGGAACCAGTCACCTTAGAATCTGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCATAAAGGAAACAGAACATGTCCAGTAACAGGAAATAGTTTAGAGTGTGTTTTCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGACCGCCTTCTTGATTTCGCCTCTCAAACGGTGGAAAATTCAGAGGAACTTAAGTTGAAAAAGCACGACGAGGCTATCGTTTTCAAGTTACAAAGTCTTTTCTCTTCCTTGAAAGACGAGGAAAAATCAAGCTATGCGAAGCATATAATCTCTTTAGGagttttttcatttctttttaggAGATTTGAACTAGGAAATATGGAAGAAAAATCACATGTTTTGGAGATCTtgttaaattgtattcaagtaGACTCTAGTTGCATATACAAGATAGCTAGAAGTATCAATAGAAAATTTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACACCAACAACAAACACATTTCTCTTCCTTACTGAACTTTTGTCATTGAAGAGGAGAAAGGATGTTACTTATTTCATAAGTGGTTTGGTGAGTGAAGATGTATTTAGTACAATGGATATTGTGCTCATGTATCTCAAGAATTCTTCACCAATTGAAAAGCCTCTCATTGCTGTTCTCTTATTACACTTTGATCTACCGGTTGAGCAGCCTCAAAAGATTAGCATATACATAGAGAATGCCGTGAATGCCATTGCAGAGGCACTTGATGCCAGCTTAAATGACGAGAATATCCAAAAGAAGTGTTGCAGAGCTCTATTAATCTTGTGTGGCCATTTTTCTTCCACTGGAAAGATACCAACCAAGACTACCATCTTAAAGCAAGCAGGTTATAACAATGGTAGCTCAGAATTGAAATCCCCTAGCCATGATGAAGAGGATCAACGGTTAGATATAACCATTTCATcggaagatgaaaaagaagaaaggcATGAAGAGTTCGTGATGAACTTGTTAGAAACATTGATTGGTGATGGAGAAAGTCCATTCTTGAAGAGCATATCTAGATGTTTAGATTCTAGACATGTAGATTTGGTGAGGGCTAGTCTAATAACTGTTACATGGTTGAGTTCCTCACTTTCTAAACAATATAATGCTGGACTGCATCTTCCTGCATTCTTAGCTATCATCTCTCAGCTTAAAGGAATCCTGCAAAATGGAGAACTTGAGCTCAAAACTCTTGCATCTATGTCCTTGTTTAACTTCAGTAAAATATCAGAATGCAGAACACTTTTGAAGATTATGGCAGAAGATATTGTTCCCATTCTTCATGGACTAGTTGATGTAATATGGACTGCTAAGAAACTGCACGGCATTTTGTGTAGGGAGAATTTGTAG 3231 0.3525 MASSLEDLLREEGFKGSSKRVHRSRSSFHHGASSDPLHSLEERLCVSSSERIKTQKTKSKTASRYQINNTRDNKNTRSKDNNNVFIGNEINHGLLKNDESEKNKSYNSSESDSGFEDVYSDKVSDAKRGKDKYFKEKMVEKPIKDSYMLRQLSGNRKNVKHQEKSQTISNNNSKSFENSRNKTSHQLQADSSLAIDEIAVKALVSILNGYIESFLKDEDFRSALRHNCFSSLNFIQLEEEENNSETKVITSLEQAIECIEKTAAEEEPKSATNLKRATMQLSIIAGLSLNDLKHDLTCGIPNFKLSACAHLYLSVVYMIQIKKKVSAKHLLQVFCDSPFQARTILLPELWERLFYPQFAHLKKWYNNKEGEIVVDTPSRKPRKLKILQKVYNESLDSGTQTFALYYKDWLSEGVETPTIPSIGIPSFSVTSRQGSSFGHSFESSSSNEPFSPQAMVSKKLYDSFFGGYSKPQVYVVDEDKDEDSYENCERGSYGSTVVKKTVIYESETVKFIDQSDEDFNPSVPVHGFHPKGTSRTAAEEWKEKNSRNTTRKYFSIETNLNSHIVDDLPHEKGNEISLRKTQPNMISSTLEGSYFPSIPQEFICPLTRKVFEEPVTLESGQTFERKAIKAWFHKGNRTCPVTGNSLECVFMPFTNLILKRLIDNWKSEDFDRLLDFASQTVENSEELKLKKHDEAIVFKLQSLFSSLKDEEKSSYAKHIISLGVFSFLFRRFELGNMEEKSHVLEILLNCIQVDSSCIYKIARSINRKFLLELLHSKEVTPTTNTFLFLTELLSLKRRKDVTYFISGLVSEDVFSTMDIVLMYLKNSSPIEKPLIAVLLLHFDLPVEQPQKISIYIENAVNAIAEALDASLNDENIQKKCCRALLILCGHFSSTGKIPTKTTILKQAGYNNGSSELKSPSHDEEDQRLDITISSEDEKEERHEEFVMNLLETLIGDGESPFLKSISRCLDSRHVDLVRASLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILQNGELELKTLASMSLFNFSKISECRTLLKIMAEDIVPILHGLVDVIWTAKKLHGILCRENL 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00026 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 670 IPR013083 -
Tsu04g00026 1076 MobiDBLite consensus disorder prediction 1 121 - -
Tsu04g00026 1076 SUPERFAMILY ARM repeat 692 1059 IPR016024 -
Tsu04g00026 1076 MobiDBLite consensus disorder prediction 154 186 - -
Tsu04g00026 1076 Coils Coil 235 255 - -
Tsu04g00026 1076 PANTHER OS04G0584500 PROTEIN 1 1074 - -
Tsu04g00026 1076 PANTHER OS04G0584500 PROTEIN 1 1074 - -
Tsu04g00026 1076 Gene3D - 688 1068 IPR011989 -
Tsu04g00026 1076 ProSiteProfiles U-box domain profile. 597 672 IPR003613 GO:0004842|GO:0016567
Tsu04g00026 1076 MobiDBLite consensus disorder prediction 164 186 - -
Tsu04g00026 1076 Pfam U-box domain 598 668 IPR003613 GO:0004842|GO:0016567
Tsu04g00026 1076 SMART Ubox_2 601 665 IPR003613 GO:0004842|GO:0016567
Tsu04g00026 1076 SUPERFAMILY RING/U-box 592 668 - -
Tsu04g00026 1076 CDD RING-Ubox_PUB 602 643 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00026 Tsu-Chr4 271154 276522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00026 565 666 U-box Gene Family AT1G68940 38.053 1.96e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00026 - - gmx:100820501 1315.83