Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00022 ATGTCAGGAGGAATATCATACTCTGCTTTTATTACTCCCAGGTTAGTTCTCAACAAGTTTCTTGCTAAATCTCAACGTGAAGGGGTTGGAGCTATTGTTAGAAGAGGCATTGGAAGGAGTGAGTTGAGGAACTTGGATCCTTTTCTAATGTTGGATCACTTCTCagTGTCTCCTCCTGGAGGATTTCCTGATCATCCACATAGAGGCTTTGAAACGGTCACATACATGCTAGAGGGAGGTATGACTCACCAAGATTTTGCTGGCCACAAGGGTACAATTAGAGCTGGTGATGTTCAGTGGATGACTGCTGGAAGGGGAATAATTCACTCTGAAATGCCTGCAGAAGCAAACAACAATGGATTGCAATTATGGATCAATTTAAAATCCAATGACAAAATgaTTGAGCCAAATTATCAAGAACTTCCAAGTGAGAACATACCATCAGGAGAAAAAGATGGTGTTGAAGTTAGAGTGATAGCAGGAGAATCAATGGGAGTAAATTCACCAGTCTACACAAGAACACCAACTATGTTCCTTGATTTCACCATGTTACCAGGAACTCAActgcatcaaaatattcaagAATCATGGAATTCATTTGCATACATAATGGAAGGAGAAGGTGTTTTTGGTTCACCAAATTCATCACCAATTATGGCTCATCATGTCATTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAACTCTTCAAACCCTCTAAGATTTGTGTTGATTGGTGGACAACCATTGAATGAACCTGTGGCTCAGTATGGACCATTTGTCATGAATACACAATCTGAGATTGAGAAGACTATTGAAGACTATCAAAATGGTAGAAATGGATTTGAGATGAGGCTAAATTGGAGATCTCAATAG 882 0.3855 MSGGISYSAFITPRLVLNKFLAKSQREGVGAIVRRGIGRSELRNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGMTHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNNGLQLWINLKSNDKMIEPNYQELPSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMLPGTQLHQNIQESWNSFAYIMEGEGVFGSPNSSPIMAHHVIVFTQGDGLSVWNNSSNPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQNGRNGFEMRLNWRSQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00022 293 Gene3D Jelly Rolls 27 279 IPR014710 -
Tsu04g00022 293 CDD cupin_pirin_C 175 251 - -
Tsu04g00022 293 CDD cupin_pirin_N 31 127 - -
Tsu04g00022 293 Pfam Pirin C-terminal cupin domain 178 283 IPR008778 -
Tsu04g00022 293 PIRSF Pirin 12 291 IPR012093 -
Tsu04g00022 293 PANTHER PIRIN-RELATED 8 293 IPR012093 -
Tsu04g00022 293 Pfam Pirin 34 125 IPR003829 -
Tsu04g00022 293 PANTHER PIRIN-LIKE PROTEIN 8 293 - -
Tsu04g00022 293 SUPERFAMILY RmlC-like cupins 14 291 IPR011051 -
Tsu04g00022 293 Gene3D Jelly Rolls 147 252 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00022 Tsu-Chr4 240456 242295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00022 5 286 Calmodulin-binding Proteins AT3G59220 64.789 1.80e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00022 K06911 - gmx:100775597 499.975