Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00017 ATGGATATTAATATTGGCAAGAGCATGAAGCAGGGGAACAAGAAGTCAGGCCTCATCACAAAAACATGGGAGAGATGCAAGTCCATAGGAAGAGGAGGGTACAAAAGTAAATATCCATCATCGGTGACTCCAACGACAAGAAGGAGCAAATCATGGCCTAATCTGCGAGGCGGAGGAGAAAAAGGAGGAAAGAAAGGCGGTGTTGTGGCTCCGGAAGGATGCTTTTCGGTTTACGTTGGGCCTCAAATGCAAAGGTTTGTGATCAAAACTGAGTATGCTAATCATCCTTTGTTCAAGATGTTACTTGAAGAAGCTGAATCAGAATATGGTTATAGCTGCCAAGGACCTTTGGCCCTTCCTTGTAATGTTGATGTCTTTTACAAGGTGTTGATGGAAATGGATAGTGAAGCTCCTCCTCCTCATGGTTGTGCTTTCGGAAATCGTTCTCGTTCTTCTTATCATCTTCTTAGCCCTTCCAAAATGATTGTCTTAAACAACTTCTGA 504 0.4306 MDINIGKSMKQGNKKSGLITKTWERCKSIGRGGYKSKYPSSVTPTTRRSKSWPNLRGGGEKGGKKGGVVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSCQGPLALPCNVDVFYKVLMEMDSEAPPPHGCAFGNRSRSSYHLLSPSKMIVLNNF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00017 167 PANTHER SMALL AUXIN-UP RNA-RELATED 15 136 - -
Tsu04g00017 167 MobiDBLite consensus disorder prediction 38 52 - -
Tsu04g00017 167 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 15 136 IPR003676 GO:0009733
Tsu04g00017 167 MobiDBLite consensus disorder prediction 37 65 - -
Tsu04g00017 167 Pfam Auxin responsive protein 54 130 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00017 Tsu-Chr4 197519 198022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00017 70 135 Calmodulin-binding Proteins AT5G20810 46.970 2.77e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00017 K14488 - gmx:100777217 201.83