Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00014 atgatgatgaattttgtTAAGAAGAATGGTGAAGTGAGACTACCTCCAGGTTTCCGTTTTCATCCAACTGATGAAGAACTTGTTGTTCAATATTTGAAGCGCAAGGTCTTCTCTTTACCCTTACCCGCTTCCATCATTCCTCATGTTCATCTTTGCAACTCTGATCCATGGGATTTACCTGGTGATTTGGAACAAGAAAGATACTTTTTCACTACTAAAGAAGCCAAATACCCAAATGGGAACCGATCCAACAGAGCTACTAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATTATCTCCAAATCTTCTGGTGCTGTTCTTGTTGTTGGGATGAAGAAGACTCTTGTTTTCTACACAGGCAAACCACCTCATGGTTCTAGAACTGATTGGATCATGCATGAATATCGCCTCTCTTCTAACCCCAACCCCATCAATGAAAATTGGGTACTGTGTCGCATATTTCTCAAGAGAAGAGGTGGTGCTGCTAATTCGGACACAGTTACAGCAGCAGTCAAACCCATTGCcaagcagcagcagcagcagcaggtTATTAAGAACAATTCAAGTAGTTCAAAGGTGGTTGTTTTCTATGACTTTTTGGcacagaacaacaacaacaacaacactgaTGCCTCCTCCACCTCCTCCTCAATCACAGATGAATTGGGTGAACATGAAAATGAAGACAGCAGTAGCTCATTCACAATCCtcccatcatcatcatcttgtcTTACAAATAAACAACCTTAA 759 0.3623 MMMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSLPLPASIIPHVHLCNSDPWDLPGDLEQERYFFTTKEAKYPNGNRSNRATNSGYWKATGLDKQIISKSSGAVLVVGMKKTLVFYTGKPPHGSRTDWIMHEYRLSSNPNPINENWVLCRIFLKRRGGAANSDTVTAAVKPIAKQQQQQQVIKNNSSSSKVVVFYDFLAQNNNNNNTDASSTSSSITDELGEHENEDSSSSFTILPSSSSCLTNKQP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00014 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 238 - -
Tsu04g00014 252 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 238 - -
Tsu04g00014 252 MobiDBLite consensus disorder prediction 232 252 - -
Tsu04g00014 252 MobiDBLite consensus disorder prediction 209 252 - -
Tsu04g00014 252 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Tsu04g00014 252 MobiDBLite consensus disorder prediction 209 223 - -
Tsu04g00014 252 Gene3D NAC domain 23 163 IPR036093 GO:0003677|GO:0006355
Tsu04g00014 252 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Tsu04g00014 252 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00014 Tsu-Chr4 164945 166640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00014 8 235 NAC Transcription Factor Family AT5G13180 54.959 1.43e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g00014 NAM 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00014 - - gmx:100170744 288.885