Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03604 ATGGCTTCAAATCACTTGTCAGCTAACATGTTGCTTCGAATTGACACAAATTGGTTAGTTCCACTTGCACATCATGCGTTTCCTCATAAGATTGAGGTGACGAGAAAGTGCTTTGTCCCCACATTGACAAGAAGGAGTTGTCAAGAGTGTGAATTTGTGATTCATTACGACAATGATGataagagaagaagaaggagttCAAAGTGGCAGCAGCGGCGGCATTGCGGTTTGGGGAAGATGGGGGAGACTGTCTCTGAATGGGAACTGCAGCAAGGTCGTATGGCTGTTTCAACTTTTCTTCAACAAATGGGTGTCTCGGTTGACGAATCTGAATCAATCGCATCAAACTCCCCATCATATCTCAACATGTTAGTTGAAGGTGTTAGGGATTTGGAGCACttgtcttcatcttcttcttccatgtTGGATGGTAACGGTATGTTCAACTCGAGCTTCAACTATAGAGATAAGATTCTTCACATTGCAGCTCTCAAAGGTGACAAAGGCAAACTAGCTTACTTAGAGAGTCTTGGCTTCACACTCTCTTCCTCTATGAATGTTGCCAGATATATCTCATCCTCTTCTTCTGCTCACAACAGCACCCTCCCATCTCTCATAAACAAGGTTACTTCTATCAAACAGCTCCTATTTCCTCCCACTCATAATGATCATCACTATCAATTCCTTATCAAGAATATTCGCCTCATAATGTGCCACTTATCAATTTCAATAGATGAAGATATGCAACACGCTTTCTCCTTTTTCGAAAAGGTTCAAGCAAAGCGTGGAGGTCTAAATATTCTTGCTTCTCAAGATGCTGCTTTCCGATGCTTACTCGAATCATTTCCTCGTATACTTTTGTTATCACTAAAGAATCACATCTCACCTATACTGGATTTTCTCCAAAATATTGGGATCCCCGCAGATCGCATTCCAAACATAATATTGGCTTTTCCTCCTATTTTGCTCTGGAATGTGAGACTCCTCAAAACTAGAGTTCTCGCCTTGAACCAGATTGATGGTGTGGATAAAGATTATGCCAAGTTGATGCTGAAATATCCGTGGGTTCTATCTACAAGCATTCAAGAGAACTATAAGGAGAtcgttttctttttatattccGTAAAGGTTCCAAAGACAAGGATAGACCATGCAATCAAAAGACAACCTCAACTATTGGGTTGTTCAACTAGCAAGCTGAAGTTGATGGTGGATCAGTTTGCCGAACTAGGAgttcaaaagaaaaagttgtatTGGGTTATCATTAGAAGTCCTCAGCTATTATTAAAGAAGCCCGAAGACTTTCAACAGGTTGTTCTGTTCTTTGAAAATATGGGTTTTGATGAAGAAAATATTGGGAAAATACTTGCTCGCTGCCCTGAAATTTTTGCCAGCAGCATTAGTAAAACATTACAAAGGAAGATTGAGTTCCTTAGTAGAATTGGTGTTTCTAAAGCTTACATTCCTGTGGTTATCAGAAAGTATCCAGAACTACTTGTGTCTGACATTGACAAAACCTTACCTCAACGGATAGTGTACTATATAAAGCTAGGACTTTCAGAGAAGGACATTGCATTTATGGTCTCTAAATTTTCTCCTATACTTGGGTACAGCATAAAGGAAAAGGATGTTTTGAGGCCAAAAATAGAATTTCTGGTGAACACAATGAAGAGGCCGGTAAAAGAAGTGGTGAGCTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAACCAAGATATTGGGTTCTGAAAGGAAGGAATATTGAATGTAGCTTAAAGGATATGCTGGGGaaaaatgatgaagaatttgtTGCTGAATTTATGGGTGTTGGACGGAATTCAGCTCTTGATAGGCTGTAA 1866 0.3783 MASNHLSANMLLRIDTNWLVPLAHHAFPHKIEVTRKCFVPTLTRRSCQECEFVIHYDNDDKRRRRSSKWQQRRHCGLGKMGETVSEWELQQGRMAVSTFLQQMGVSVDESESIASNSPSYLNMLVEGVRDLEHLSSSSSSMLDGNGMFNSSFNYRDKILHIAALKGDKGKLAYLESLGFTLSSSMNVARYISSSSSAHNSTLPSLINKVTSIKQLLFPPTHNDHHYQFLIKNIRLIMCHLSISIDEDMQHAFSFFEKVQAKRGGLNILASQDAAFRCLLESFPRILLLSLKNHISPILDFLQNIGIPADRIPNIILAFPPILLWNVRLLKTRVLALNQIDGVDKDYAKLMLKYPWVLSTSIQENYKEIVFFLYSVKVPKTRIDHAIKRQPQLLGCSTSKLKLMVDQFAELGVQKKKLYWVIIRSPQLLLKKPEDFQQVVLFFENMGFDEENIGKILARCPEIFASSISKTLQRKIEFLSRIGVSKAYIPVVIRKYPELLVSDIDKTLPQRIVYYIKLGLSEKDIAFMVSKFSPILGYSIKEKDVLRPKIEFLVNTMKRPVKEVVSYPRYFSYSLEKKIKPRYWVLKGRNIECSLKDMLGKNDEEFVAEFMGVGRNSALDRL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03604 621 Pfam mTERF 298 605 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 140 437 - -
Tsu03g03604 621 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 436 616 - -
Tsu03g03604 621 SMART mt_12 347 378 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 383 413 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 419 448 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 525 559 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 489 520 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 453 484 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 SMART mt_12 560 591 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 Gene3D Transcription termination factor 3, mitochondrial 403 614 IPR038538 -
Tsu03g03604 621 PANTHER CGI-12 PROTEIN-RELATED 436 616 IPR003690 GO:0003690|GO:0006355
Tsu03g03604 621 PANTHER CGI-12 PROTEIN-RELATED 140 437 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu03g03604 mTERF 4.9e-93 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03604 K15032 - gmx:100802127 714.531