Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03559 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGACATAATTCAAGAACTTGTAATTCTTTAAGAGGAAATAATAGTTTTGTTGGAATTAGACTTTTTGGTGTTCAACTTGATTTATCATCTTCTTGTGTTTCCATGAAAAAGAGCTTTAGCATGGATTCTTTTCctacttcatcttcttctcctacttcttccttttcttcctCAAGATTAAACATTGATGATAAAACCTCTATTGGTTATCTTTCAGATGGTCTCATAGTTAGAACACAAGAAAGGAAAAAAGgaGTTCCGTGGACAGAAGAAGAGCACAGAAAATTTCTTGTTGGACTTGAGAAGCTTGGAAAAGGAGATTGGAGAGGTATCTCTAGAAATTATGTGACTACAAGAACACCAACCCAAGTTGCAAGTCATGCTCAAAAGTACTTTATTCGACTTGCTACCTTGAATAAGAAGAAGAGACGTTCTAGCCTCTTTGACAtgGTTGGTAGCGGCAACACAAACAGAACAGGTGATCATGAGAATGAGAAGGATAATGCAACTTTGTCATTACTGATAACCTCActtcaaaaccaaaccaaatcaagtGATTAtaataagcaaaaaattgaagatGCTTTGATTGAAGAAGTTGAAGAAGCAGAACATGATGAAGTTGTGCCTGATTGGCTACATCCTTTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATGCAACAACACCTGATCTTGAGCTAAGTCTTGCAGTTCCtaagtctaataataataagaccATGGAACAAGATAAAACATCTAAGAGTTCATTTCTTATTGGTCCAATTAGTGTGACTTAA 846 0.3132 MGRKCSHCGNIGHNSRTCNSLRGNNSFVGIRLFGVQLDLSSSCVSMKKSFSMDSFPTSSSSPTSSFSSSRLNIDDKTSIGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGNTNRTGDHENEKDNATLSLLITSLQNQTKSSDYNKQKIEDALIEEVEEAEHDEVVPDWLHPLTKSLNMTLVIPNSSNATTPDLELSLAVPKSNNNKTMEQDKTSKSSFLIGPISVT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03559 281 SUPERFAMILY Homeodomain-like 92 146 IPR009057 -
Tsu03g03559 281 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Tsu03g03559 281 CDD SANT 98 143 IPR001005 -
Tsu03g03559 281 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Tsu03g03559 281 PANTHER TRANSCRIPTION FACTOR KUA1 1 279 - -
Tsu03g03559 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Tsu03g03559 281 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Tsu03g03559 281 Gene3D - 97 149 - -
Tsu03g03559 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Tsu03g03559 281 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Tsu03g03559 281 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 279 - -
Tsu03g03559 281 SMART sant 95 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03559 Tsu-Chr3 48833987 48836242 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g03559 Myb_DNA-binding 7.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03559 - - gmx:778052 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03559 03 48833987 48836242 Tsu03g03559 03 48833987 48836242 ECH