Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03552 ATGTTGAAGAGAGAACAATGTGACCACACTAAACATGATTCCAGCTTCTCTCATTGGAAGATTCTTATCGGTCCATCTGATTGGGAAGATTACTCCAAAGGAAAGGAGGGGTCTATGGCATATAGGATTCACAACCTGCCACGAGATGATGGTCCCGGAGTTTATGAGCTTGGAGTAGTTGTAATGACCAGTGGTTTTGGGCGTAAAATTTTCAAGCTTACCACCGACCCTCGTCGAGTAGTTGTTGTTTATCTCGGAGAAGCTGGCAATGTGAAAACAAGACTCCAATGTTATGGTAGAGATGGAGCTCATTTGGGTGGTTGTTCTTCGTATGAATCGTCTGATCAAATGGGTCGCTCATTGTTTCACGAGATATTTTTTCAAGGCTTCCCAATTGTTTATAGATGGGCTTCGATGCAGACAAAGGGAGATGCCTTGCAAACAGAATCTCAACTGCTAACTACATTTGATTATGCATGGAACACAATTAATAATGGTAAGCGTCGGCCCGATGATATTCTTCAAATGCTCAACAAAATTTCATCAGGCGAAAGCGCGAGAACAATATCATATGTGGTCAAATCACTTCTACCCTTCACTCAAAAGAAAGTAGGGATAccaattaaatcaagaaagtTGATTATGACAGATAACAAATCAGACGAAGCAGACAATGGTAACTACAATTTCCTATCTCGTGTGTTCAAATTCAACCGTTCGCGTCCTAAGATAGTTCAGGATACAATTGTTCGTGCCATTGAGAATAACGATAAAATTTGTGGAGTTATTTTGGATGATGGTTCTAGGTGTACGAAGTCACCGGTCGAAAAAAGAGTTAGGTGTCTTGAACATAAAGGAATGAGAATAAATGTAGTTACAACAAAAGCAATAAGAAAATCCAAGTCAGAATCAGAAATTGTTGTTGAGAGTCTTGTTGACGAGAGTATCACCAAAACTATTATATGTGGATTTATTATGGAAAATGGATCCACATGTAGAAAAGAACCGGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGAATGAGAATAAAGTTGGTTACATCCAAGTCGGAATCAGAAAATGTTGTTGAGAGTCTTGTTGATGAGAGTATCACCAGAACTATCATTTGTGGATTTATTATGGAAAATGGATCCACATGTAGAAAAGAACCGGTTAAAGGAAGAAAAAGATGTCTTGAACACAAAGGGAGGAGAATAAAGTTGGTTACATCGAAGTCAGAATCAAAAAGATTTATTGAGAGTCTTGTTGATGAGAGTATCACCAGAACTATTATATGTGGATTTATTATGGAAAATGGATACACATGTAGAAGAGAACCAGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGAATGAGAATAAAGTTGGTTACATCCAAGTCAGAATCAGAAAATGTTTCTAATCGGGTCATCCACCAATTAGACCAAAATCTGAATTCTAAGATTGAGAATAACGGTAAAATTTGTGGAGTTATTTTGGATGATGGTTCTATTTGTACGAAGTCGCCGGTCGAAAAAAGAGTTAGGTGTCTTGAACACAAAGGAATGAGAATAAATGTCGTTACTGCAAAAGCAATAAGAAGATCCAAGTCAGAATCAGAAACTGTTGTGAATTCTTACGAAACAAACCACACCAATAATCCTtga 1674 0.3698 MLKREQCDHTKHDSSFSHWKILIGPSDWEDYSKGKEGSMAYRIHNLPRDDGPGVYELGVVVMTSGFGRKIFKLTTDPRRVVVVYLGEAGNVKTRLQCYGRDGAHLGGCSSYESSDQMGRSLFHEIFFQGFPIVYRWASMQTKGDALQTESQLLTTFDYAWNTINNGKRRPDDILQMLNKISSGESARTISYVVKSLLPFTQKKVGIPIKSRKLIMTDNKSDEADNGNYNFLSRVFKFNRSRPKIVQDTIVRAIENNDKICGVILDDGSRCTKSPVEKRVRCLEHKGMRINVVTTKAIRKSKSESEIVVESLVDESITKTIICGFIMENGSTCRKEPVKGRKRCHEHKGMRIKLVTSKSESENVVESLVDESITRTIICGFIMENGSTCRKEPVKGRKRCLEHKGRRIKLVTSKSESKRFIESLVDESITRTIICGFIMENGYTCRREPVKGRKRCHEHKGMRIKLVTSKSESENVSNRVIHQLDQNLNSKIENNGKICGVILDDGSICTKSPVEKRVRCLEHKGMRINVVTAKAIRRSKSESETVVNSYETNHTNNP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03552 557 Pfam GIY-YIG domain-containing protein 16 174 - -
Tsu03g03552 557 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 420 554 IPR038909 GO:0003677|GO:0006355
Tsu03g03552 557 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 1 362 IPR038909 GO:0003677|GO:0006355
Tsu03g03552 557 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 358 418 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03552 Tsu-Chr3 48744768 48750939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03552 407 550 HRT Transcription Factor Family AT5G56780 38.312 1.75e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Tsu03g03552 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03552 - - fve:101314891 454.136