Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03536 ATGGTGGAGAAGGGTGCCGCTGGTAGAAAAGAGGAAGTTGTTACTCGTGAGTACACAATCAACCTCCACAAGCGTCTTCATGGCTGCACCTTCAAAAAGAAGGCACCAAAAGCTATCAAGGAGATAAGAAAATTTGCCCAAAAATCCATGGGCACTACCGACGTTAGGGTCGATGTCAAGCTGAACAAGGCTATCTGGAGCCAGGGAATTAGAAGTGTACCCAGGAGGATCAGGGTACGCATTGCTCGCAAGAGGAACGATGACGAAGACGCCAAGGAAGAACTATACTCCCTTGTCACAGTTGTTGAAATTCCCAAGGAAGAGCTAAAAGGTTTGGGCACCAAGGTCATAGACGACgaggattga 366 0.4672 MVEKGAAGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKSMGTTDVRVDVKLNKAIWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03536 121 PANTHER OS06G0319700 PROTEIN 1 121 - -
Tsu03g03536 121 SMART Ribosomal_L31e_2 11 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tsu03g03536 121 PANTHER 60S RIBOSOMAL PROTEIN L31 1 121 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tsu03g03536 121 CDD Ribosomal_L31e 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tsu03g03536 121 Gene3D - 9 121 IPR023621 -
Tsu03g03536 121 Pfam Ribosomal protein L31e 12 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Tsu03g03536 121 SUPERFAMILY Ribosomal protein L31e 12 93 IPR023621 -
Tsu03g03536 121 ProSitePatterns Ribosomal protein L31e signature. 55 69 IPR020052 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03536 Tsu-Chr3 48590581 48592467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03536 8 121 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 83.333 2.19e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03536 K02910 - gmx:100499742 211.075