Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03533 ATGGCCAATTCAATTGGATTCATTCTGTTTCTGGTTTTCTCTTTTGGTGTTAAAGTTTTAGTTCATGCACAACGACATACAGGCTTCATAAGCATTGATTGTGGTGCTCCAGCGAATATACAGTACACAGATGATGTAACAACAATGACGTACAGCTCAGATGGATCATACATACAAACTGGACTTACCAGAAACATTTCTTCTGTCTATGCATATCCAAACAATCCAAATCTACCATTACCACTCTCCGATCTCAGGAGTTTTCCTGACGGAAACCGAAACTGTTACGTATTAAAATCTGGAAGAAAACACGGtttaaatttacatttaataagAGCTTCTTTCTTATATGGAAACTATGACGGCAAAAACAAACTACCTGAATTTGATCTCTATGTTGGTGTAAATTTCTGGTCATCAGTGAAATTTAAGAATGCTTCAGAACAGGTTACAATGGAAATAATCAGCGTGGCAGAATCAAATGAAACAAATGTTTGTCTTGTGAATAAAGGAAATGGAATTCCTTTCATCTCATTATTGGAACTTAGACCAATTTCTGAGAATATTTATGGCATCGAGTTTGATGATTATACTTCacttttacttttcaaaagattGGATACTGGTTCATCAGTTAATGAAAGTGTTAGATATGTAGATGATGCTTATGATAGAGTTTGGTTTCCTTATAGTTCCTCTTCATGGAAATCTATAAACACTTCTtcaaaaattgatattgatGGTGGTGGATATAGACCACCACTTGACATTATTAGAAATGCCGCTACGCCAATAAATGAGAATGATACTTTGGAATTTTTTTGGAAATCAGATGAACCAACTATGGAATTTTATGTCTATTTGTATTTTGCTGAAGTGGAGAAACTTAACGAAACTCAGCGGAGAGAATTTATTGTTTCTTGGAATGGAACTCCTCTGACGGGATCTTTTGTACCAAGATACTTGGAAGTAACCACTGTTAACATTAGCAATCGTAAGTTGTTATTCGCAGACGAACATCGAATTTCAATACATAGAACTGAATATTCGACGCTTCCACCTATTCTTAATGCAGTGGAGATTTATGTAGTAAGAAAAAGTGATGCGGTTCCAACATTTAAACACGATGTTAAAGCTATAAGTGATGTAAAAACAAGTTATAGAGTTCAAAGAAATTGGGTTGGTGATCCATGTGAACCAAAAAACTACACATGGGATGGCTTAAAATGCAACTACAGCACTTCACATGCTCGAAGAATTGTATCATTGAATCTGAGCAGAAGCAGTCTCGGTGGAAACATAACTCCTTCCATTTCCAGTTTGACTTTCTTGGAATCTTTGGATTTATCTAACAATAGCTTAACTGGATCAATACCTCAGTTTTTTGATGAACTGAAGTCCCTTAAATATTTGAATTTAAGAGGCAACCAACTTTCAGGTCTTGTCTCTGCACATCTCCTAGAAAGATCAAAAAACAGATTACTTACTTTGAGGGTGGATGATAAAAATCTCCCTGGTTCAAGTAAAAAAAGGAAGGTGATTGTTCCCATTGTTGCATCAATAACATCGGTTTTAGTTCTATTGGTCATTGCCATTCTCTATTGGAAGCTTAGAAGAAGAAATGCAACATCAGAGGTGGAGATGAATATGATCAACAAAGGATCAAGTAATGTAGTATCAAAGAAGTTGCAATACACTTATGCTGAGGTGATGGAAATCACTAGCAACTTTGAATTGGTCATTGGTAAGGGAGGATTTGGAAGTGTGTATTGTGGTCAGATGAAAGACGGCAATAAAGTTGCAGTCAAAATgctttcttcatcttcaactcAGGGTCCAAAGGAATTTCGAACTGAGGCTGAACTATTGATGACAGTTCATCACAAAAATTTGGTATCCTTCATTGGCTATTGTGATGAAGGTGACAAGATGGCACTCATATATGAGCACATGGCTAATGGCAACCTAAAAGAATGTCTCTCAGAAAATCATTCACATTGCTTGAGTTGGGAAAGGAGACTTCAAATAGCAATTGATGCTGCAGAAGGATTGGATTACCTACACCATGGATGCAAGCCACCTATAATACATAGAGATGTAAAATCAGCAAACATTCTTCTAAGTGAAGATTTAGAAGCTAAGATAGCAGATTTTGGACTCTCTAAGGTGTTTAAGAATAGTGATAATCTAAATGCAGAATCGACGATGATTCTTGTTGATGATGGTAATGAAAAATCTGCAATCATGGGAACAATGGGCTACCTTGATCCAGAGTACTACAAATTAAATAACTTGAATGAAAAAAGTGACATATATAGCTATGGAGTTGTCCTATTGGAATTAATCACAGGTCTCCCTGCAGTGATTAAAGGCAACCCATCAATACACATACTTGAGTTTGTAGAAACACAACTTGAAAAAGGTGACTTGAATACAATTATTGATCCAAGACTTGAAGGAAAATTTGATGTAAATTCAGGATGGAAAGTTTTAAGATTAGCAATTTCATGCACTGCATCAACCTCAATTCAGAGACCAACAATGAGTGTTGTGTTAGCTGAGTTGAAACAATGTGTTAATTTGGAGTCAACTAGTGAAAGGGAAATATGTGTGCCACAAAGACATATCAATAGTGAATTTGGGAGTTCATCTGATGCATTTAATTCCATAGATAGTGAATCTATGACATATTCTTTCCaaaTTTCCACCGATTCTCTTCCTCATGGCCGGCCTTGGAGCAGGGCAACCAGAAAGCCTTTGAATGTGGATTGGATGATGGAGAATATGACAATTTCAGACCTGTTGTTGGATAATGTGAAGTGTTGGAATACTCAACTTGTTCATGACATATTCGAGGATGATACTGCTACTACGATTCTGAAAACCCCTCTTATCAATTATGTTGCTACTGATAAGATCGTGTGGAGGAATTGTGTCCCGACTAGAGCGCGTCTCAATCAAAGAGGTCTCAATTGTTCTAGTGAATGTGCGCTGTGTGAAGTTGATTTAGAAGACAACatgcatttatttttctcttgcaTAAATAGCATCCAAATCTGGCAGCAAGCAGGATGGTGGGGAATTTTACAACAGCAGATTCATGATAATGCTACTCTGGTAGAGCAGGTTTTTTCTATTTTGCAGGTACTGACAGAAGAACAATGCTCAATTTTTATGGCTTTACTTTGGAGTATATGGCAACAAAGGAATAACAAGATATGGCGCAACAATTTGGAACCTGTTCATGTAGTAATCACACGCGCTATGGATATGATAAAAGCATGGAAAGAAGCTCAAAATAATAGGAACACGCGAACAGGCCAGCATCAACCGCAAACAACACCTGTTTGGATTAAACCGAGTGCTGGTAGATTCAAATGCAACATTGACGCGTCATTTTCCACAAATCGTAACAAGATGGGAATAGGTATGTGTATAAGAGATGATCAAGGTAGGTTCGTCCTCGCCAAAACGGAGTGGTTCACACCTATACATGAAGTTGATTTGGGAGAAGCCTTGGGGTTATTCCATGCTATTAACTGGGAACGTACAGTTGGAAAATGTGGATTTTGA 3573 0.3636 MANSIGFILFLVFSFGVKVLVHAQRHTGFISIDCGAPANIQYTDDVTTMTYSSDGSYIQTGLTRNISSVYAYPNNPNLPLPLSDLRSFPDGNRNCYVLKSGRKHGLNLHLIRASFLYGNYDGKNKLPEFDLYVGVNFWSSVKFKNASEQVTMEIISVAESNETNVCLVNKGNGIPFISLLELRPISENIYGIEFDDYTSLLLFKRLDTGSSVNESVRYVDDAYDRVWFPYSSSSWKSINTSSKIDIDGGGYRPPLDIIRNAATPINENDTLEFFWKSDEPTMEFYVYLYFAEVEKLNETQRREFIVSWNGTPLTGSFVPRYLEVTTVNISNRKLLFADEHRISIHRTEYSTLPPILNAVEIYVVRKSDAVPTFKHDVKAISDVKTSYRVQRNWVGDPCEPKNYTWDGLKCNYSTSHARRIVSLNLSRSSLGGNITPSISSLTFLESLDLSNNSLTGSIPQFFDELKSLKYLNLRGNQLSGLVSAHLLERSKNRLLTLRVDDKNLPGSSKKRKVIVPIVASITSVLVLLVIAILYWKLRRRNATSEVEMNMINKGSSNVVSKKLQYTYAEVMEITSNFELVIGKGGFGSVYCGQMKDGNKVAVKMLSSSSTQGPKEFRTEAELLMTVHHKNLVSFIGYCDEGDKMALIYEHMANGNLKECLSENHSHCLSWERRLQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSEDLEAKIADFGLSKVFKNSDNLNAESTMILVDDGNEKSAIMGTMGYLDPEYYKLNNLNEKSDIYSYGVVLLELITGLPAVIKGNPSIHILEFVETQLEKGDLNTIIDPRLEGKFDVNSGWKVLRLAISCTASTSIQRPTMSVVLAELKQCVNLESTSEREICVPQRHINSEFGSSSDAFNSIDSESMTYSFQISTDSLPHGRPWSRATRKPLNVDWMMENMTISDLLLDNVKCWNTQLVHDIFEDDTATTILKTPLINYVATDKIVWRNCVPTRARLNQRGLNCSSECALCEVDLEDNMHLFFSCINSIQIWQQAGWWGILQQQIHDNATLVEQVFSILQVLTEEQCSIFMALLWSIWQQRNNKIWRNNLEPVHVVITRAMDMIKAWKEAQNNRNTRTGQHQPQTTPVWIKPSAGRFKCNIDASFSTNRNKMGIGMCIRDDQGRFVLAKTEWFTPIHEVDLGEALGLFHAINWERTVGKCGF 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03533 1190 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Tsu03g03533 1190 SUPERFAMILY L domain-like 402 504 - -
Tsu03g03533 1190 SMART serkin_6 575 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03533 1190 Gene3D Ribonuclease Inhibitor 367 520 IPR032675 -
Tsu03g03533 1190 Gene3D Transferase(Phosphotransferase) domain 1 651 877 - -
Tsu03g03533 1190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Tsu03g03533 1190 ProSiteProfiles Protein kinase domain profile. 575 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03533 1190 SUPERFAMILY Protein kinase-like (PK-like) 559 855 IPR011009 -
Tsu03g03533 1190 Pfam Reverse transcriptase-like 1128 1180 IPR002156 GO:0003676|GO:0004523
Tsu03g03533 1190 PANTHER KINASE-TRANSFORMING PROTEIN RAF, PUTATIVE-RELATED 27 871 - -
Tsu03g03533 1190 Gene3D Phosphorylase Kinase; domain 1 557 650 - -
Tsu03g03533 1190 Pfam Malectin-like domain 32 363 IPR024788 -
Tsu03g03533 1190 Pfam zinc-binding in reverse transcriptase 973 1020 IPR026960 -
Tsu03g03533 1190 Pfam Leucine rich repeat 419 478 IPR001611 GO:0005515
Tsu03g03533 1190 Pfam Protein tyrosine and serine/threonine kinase 579 802 IPR001245 GO:0004672|GO:0006468
Tsu03g03533 1190 CDD STKc_IRAK 581 857 - -
Tsu03g03533 1190 PANTHER OS07G0107800 PROTEIN-RELATED 27 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03533 Tsu-Chr3 48553639 48563518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03533 2 866 Receptor kinase-like Gene Family AT4G29180 48.924 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu03g03533 Malectin_like 1.3e-104 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03533 - - gmx:100793137 1145.18